PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G200800.2
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 1337aa    MW: 151173 Da    PI: 6.9908
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G200800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.13.2e-27664722159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrK+GqK+vkg+++pr YYrC s+ C +kk ver+++d++++++tY+g Hnh+
  Gorai.008G200800.2 664 LDDGYRWRKWGQKMVKGNPYPRLYYRCLSTCCLAKKYVERDSQDTSFFVTTYHGLHNHD 722
                         59********************************************************7 PP
2WRKY84.87.9e-27781841259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqK++ g+++pr YYrCt++   gC ++k v+rs++dp+++eitY+g+H+++
  Gorai.008G200800.2 781 DDGFCWRKYGQKDILGAKYPRRYYRCTYKhnqGCLATKTVKRSSDDPTIFEITYRGKHTCN 841
                         8**************************998899**************************96 PP
3WRKY89.42.9e-2812691327360
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60  
                          D y+WrKYGqK++kgs+++r+YY+C+s  gCp++k+ er+ e+p+++++tYegeHnh+k
  Gorai.008G200800.2 1269 DDYSWRKYGQKPIKGSPYSRGYYKCSSMrGCPARKHSERCLEEPSMLIVTYEGEHNHPK 1327
                          99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520588.73E-2833183IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.1E-1935175IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138551.3E-946105IPR001611Leucine-rich repeat
SMARTSM00369306992IPR003591Leucine-rich repeat, typical subtype
SMARTSM003694.9116139IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:3.80.10.105.2E-7176209IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.2E-7294478IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520588.73E-28363476IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.807.4E-26657722IPR003657WRKY domain
PROSITE profilePS5081128.151659724IPR003657WRKY domain
SuperFamilySSF1182907.06E-24660722IPR003657WRKY domain
SMARTSM007741.9E-30664723IPR003657WRKY domain
PfamPF031061.1E-20665722IPR003657WRKY domain
SuperFamilySSF1182901.83E-23779842IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-25779841IPR003657WRKY domain
SMARTSM007742.5E-37780842IPR003657WRKY domain
PROSITE profilePS5081122.114781843IPR003657WRKY domain
PfamPF031066.6E-24781840IPR003657WRKY domain
PfamPF078873.2E-489591100IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF105331.2E-512441265IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.9E-3012611327IPR003657WRKY domain
PROSITE profilePS5081128.44912621328IPR003657WRKY domain
SuperFamilySSF1182902.62E-2412651327IPR003657WRKY domain
SMARTSM007742.4E-3412671327IPR003657WRKY domain
PfamPF031067.3E-2412691326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1337 aa     Download sequence    Send to blast
MLSSVTKASG PGLAEVQKVE WGAKEIHLAD DKHIVSELPR CPNCSSLIAL YLQGNYELTA  60
IPPLFFQRMQ LLQILDLSRT SIKSLPKSLR KLFALKKLLL QGCDLFMELS PQVGKLKNLE  120
ELHLDETQIM GLPKETGKLL KLQLLKVSFY HLCGKKTLKS DILIHPETIS NLSQLAELSI  180
DVNPADKRWD DSVEAVLKEV CNSKTLRTLS LYLPTFQLLD YVSLIYPSLS RFRFTVGHHK  240
RRIISRVPHE VEAEFRKWDK CLRFVNGETI PTQIKGVLKY STSFFLDHHT TAMNLSEFGI  300
ENMKGLKFCL LAECNKMETL IDGEMHYERN EDDQSESDPG SVQQMLESLE YLSIYYMEDL  360
QCIWRGADRF VCMSKLKFLA LHACPQLSEI FSLTLLENFI NLEEIILEDC PRVTSLVSHA  420
SVKPIMSDKI FLPSLKRLLV LYLPELVSIS NGLLIAPKLE SIGCYNCPKL KSISKMELSS  480
KTLKIIKGEC EWWEGMNWNE TEWGDGPGYL MHIFSPIDNQ KDVMTQMVEG RDPHEATIQN  540
EDQQLGDQKP LEVSTQDHRD YTEERMMGTD VKEPPSGCVF PSNPLCMTSH APEQARSFTS  600
GNNRSLEDDE CFLVPNIVEV DVDEDEPKAK RWNHTENENK GVIGSASKTT RGNRAANQIR  660
SKVLDDGYRW RKWGQKMVKG NPYPRLYYRC LSTCCLAKKY VERDSQDTSF FVTTYHGLHN  720
HDEWNSRGLS KLHSQPCIDH RANNVKDAAE AAKSICPTKE YGDVFQASIQ DEGAHPDLAP  780
DDGFCWRKYG QKDILGAKYP RRYYRCTYKH NQGCLATKTV KRSSDDPTIF EITYRGKHTC  840
NLASNVMPPT APSEYQEQGT RIEPQQQHNQ LTEENQKQQS QDLLVLPSTP GQCVEQSFNQ  900
KSNSGNDHLT ITHEDNNSTI VCQESSPSPS DSSSMGSQLS AAALSTEQLQ AQRFDEPAKQ  960
NQLYKKHYPP MLGDEVWRLD RIDKNGIIHK RLASEGINTV QDFLKMWVVN PGELRRILGP  1020
IMSERKLDHA INHARTCVMG NKYYVFRGSN YRILLNPICQ LMGAEVNGSI YPTHSLSNID  1080
TVYLEKLVRQ AYVNWSSLEE IEGISNEIIG PLTQDIMAQR TGANVINTIP SNLRAMPPSG  1140
PWLPELPDHP VLMDNSNVLS SPTTGECAVQ YLNQKNNSGN DQQTISQEDN NSTIVCQVPP  1200
PSQSNSSAMT SELSATALPT GSDLIQSRAP ADAHSWHCYG TKGKKRKHRV KRSIKVPSIG  1260
NKLVDIPPDD YSWRKYGQKP IKGSPYSRGY YKCSSMRGCP ARKHSERCLE EPSMLIVTYE  1320
GEHNHPKLPS RATTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2066313301478Probable WRKY transcription factor 4
2lex_A1e-2066313301478Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431140.0AC243114.1 Gossypium raimondii clone GR__Ba0041F12-jfm, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736437.10.0PREDICTED: uncharacterized protein LOC107946563 isoform X1
TrEMBLA0A1U8NBP10.0A0A1U8NBP1_GOSHI; uncharacterized protein LOC107946563 isoform X1
STRINGGorai.008G200800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-50WRKY DNA-binding protein 21