PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G201000.2
Common NameB456_008G201000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 612aa    MW: 68184.3 Da    PI: 5.9755
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G201000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY43.18.5e-146452059
                        S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                          r YYrC s++C +kk ver+++d++++++tY+g Hnh+
  Gorai.008G201000.2  6 LYRLYYRCLSTSCLAKKYVERDSQDTSFFVTTYHGLHNHD 45
                        5699***********************************7 PP
2WRKY61.12.1e-19163223259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dD ++Wr   qK+v g ++prs++rCt++   gC ++k v+r ++dp+++eitY+ +H+++
  Gorai.008G201000.2 163 DDSFCWRISEQKNVIGEKYPRSFFRCTHRhnqGCLATKTVQRLDDDPTFFEITYHRKHTCN 223
                         8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.2E-7146IPR003657WRKY domain
SuperFamilySSF1182901.05E-11545IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-11645IPR003657WRKY domain
PfamPF031063.7E-9745IPR003657WRKY domain
PROSITE profilePS5081115.066847IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-19158223IPR003657WRKY domain
SuperFamilySSF1182902.62E-18160224IPR003657WRKY domain
SMARTSM007744.1E-24162224IPR003657WRKY domain
PfamPF031062.4E-17163222IPR003657WRKY domain
PROSITE profilePS5081116.398163225IPR003657WRKY domain
PfamPF078877.1E-51341482IPR012416CALMODULIN-BINDING PROTEIN60
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSLSTLYRLY YRCLSTSCLA KKYVERDSQD TSFFVTTYHG LHNHDEWNSR GLSKLHSQPC  60
IDHRANNVKD AAEAAKSICP TKGIPEASIQ DESQRSGVEP QPSALEIIVS ESTESTPLPL  120
TGSPLSGDFD RDFKEQDQFN LDASKKSETQ QVQVRPGSAL TPDDSFCWRI SEQKNVIGEK  180
YPRSFFRCTH RHNQGCLATK TVQRLDDDPT FFEITYHRKH TCNLASNVMP PTAPSRNQEQ  240
GTRIEPQQQY NQLPEENQKQ QSQDLLVLPS TPGQCVEQSL NQKSNSGNDQ QTISQEDNNS  300
TIVCQASSPS PSDSSSMRSQ LSAAALSTAQ LQAQRFEEPS KQNQLYKKHY PPMLGDEVWR  360
LDMIGKNGII HKRLASEGIN TVQDFLKMSV VSPGELRRIL GPRMSDRMWD NATKHARTCA  420
MGNKYYVFRG SNYRILLNPI CQLMGAEVNG SIYPTHSLSN IDTVYLEKLV RQAYVNWSSL  480
EEIEGISNEI IGPLTQDIMA QRMGANVINT IPPNLPAMPP SGPWLPELPD HPVLMDNSNV  540
LSSPTTGECV VQSLNQKNNS GNDQQTISQE DDNSIIVYHA PPPSHSNSSA MIFELSATTL  600
PIVCTYLIVC A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13163222968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431141e-131AC243114.1 Gossypium raimondii clone GR__Ba0041F12-jfm, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736441.10.0PREDICTED: uncharacterized protein LOC107946565 isoform X2
TrEMBLA0A0D2PYE20.0A0A0D2PYE2_GOSRA; Uncharacterized protein
STRINGGorai.008G201000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-23WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]