PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G213900.1
Common NameB456_008G213900, LOC105764870
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 235aa    MW: 26880.4 Da    PI: 8.6709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G213900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-17134184255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr ++ +g+++AeIrdp  ng  +r++lg++ ta eAa a+++a+ k++g
  Gorai.008G213900.1 134 HYRGVRKRP-WGKFAAEIRDPARNG--ARVWLGTYETAMEAALAYDRAAYKMRG 184
                         7********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-30133193IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-22134193IPR016177DNA-binding domain
PROSITE profilePS5103223.723134192IPR001471AP2/ERF domain
CDDcd000181.03E-28134192No hitNo description
SMARTSM003804.0E-33134198IPR001471AP2/ERF domain
PfamPF008472.0E-12134184IPR001471AP2/ERF domain
PRINTSPR003676.0E-10135146IPR001471AP2/ERF domain
PRINTSPR003676.0E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MKVLSTCEHI FSCNHENPGT ISSAFTCLKS CLTEHWGDLP LKVDDSQDMI IYDSLNQALN  60
YGWSPVPPLY STVTTAVKSE PQIMMMTPFM EPNPSELTTQ PIDAAAARNC LYLEKQENKW  120
FRNYENEKVE KGRHYRGVRK RPWGKFAAEI RDPARNGARV WLGTYETAME AALAYDRAAY  180
KMRGYRALLN FPQWIGNKGP EPVRTTPTRR REDDESAWYN SSSPKRKRSS LESI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-33131192263ATERF1
3gcc_A3e-33131192263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208227RRREDDESAWYNSSSPKRKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439106.11e-178PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404791e-63ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A0D2T4D11e-176A0A0D2T4D1_GOSRA; Uncharacterized protein
STRINGGorai.008G213900.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2825633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-49ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]