PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G221900.2

Common Name

B456_008G221900, LOC105764962

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 225aa MW: 25346.5 Da PI: 8.9644

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G221900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.4e-33	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Gorai.008G221900.2 29 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 83 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.619	26	86	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-32	26	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	29	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-25	29	84	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-9	31	82	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-20	118	163	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MERLNYGGGG GGEGNYWYEN EVVMSRDPKP RLRWTADLHD RFVDAVTKLG GPDKATPKSV 60 LRLMGMKGLT LYHLKSHLQK YRLGQQTRKQ NAVDLNKVNG GTIITNSPRA DSEQRQIPVA 120 EALKNQLEVQ QTLQEQLEVE KKLQMRIDAQ GKYLQAILEK AQKRVSIDIN YCEGNGEEET 180 NFSVLNKANC SAFQNYGGRR RENSKDVKLE VEGDSTAFDL KDQT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	29	82	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	29	82	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	29	82	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	29	82	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439260.1	1e-167	PREDICTED: myb family transcription factor APL-like isoform X3
Swissprot	C0SVS4	2e-67	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A0D2U7N7	1e-165	A0A0D2U7N7_GOSRA; Uncharacterized protein
STRING	Gorai.008G221900.1	1e-155	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G221900.2
Entrez Gene	105764962

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]