PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G225800.1
Common NameB456_008G225800, LOC105764999
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 332aa    MW: 37586.1 Da    PI: 8.2092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G225800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14124175155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Gorai.008G225800.1 124 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 175
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.32E-13122179No hitNo description
SuperFamilySSF474598.94E-17122193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-14122179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLESGLVFRE TRIARYIVWR CRLGFSREMT LETLSSNDLL NFVIYDTISA TPYNSNDSFV  60
TTFSMEEQST STALNCFPMV TPPQCCRSTA TEAMERRPNL AVQGRKKRRR KPRVCKNKEE  120
AETQRMTHIA VERNRRKQMN EHLAVLRSLM PESYVQRGDQ ASIVGGAIEF VKELEHLLQT  180
LEAEKFRVLQ QVTPAAAANE ETTNTNSKML SSPPFAQFLM QPQYTWSQIP NKYTSKTEAS  240
TADIEVTLIE THANLRILLR KGPTQLCKLV AGFQSLYLSI LHLNVTTLDP FVLYSISAKV  300
EEGCQLSSVD DIARAVHHMI RIIEQDATAL C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110RKKRRRK
2104111RKKRRRKP
3105110KKRRRK
4124135RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431650.0AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439313.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ56XR03e-75BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A0D2TAW50.0A0A0D2TAW5_GOSRA; Uncharacterized protein
STRINGGorai.008G225800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.17e-71beta HLH protein 71
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]