PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G232100.1
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 247aa    MW: 28475.1 Da    PI: 8.7947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G232100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.91.2e-083479253
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53
                        ++kGV     r++W A+I        + + ++lg++ t+eeAa a+++a++++
  Gorai.008G232100.1 34 RFKGVLPL-ERHKWGARISF------NyRAYWLGTYYTEEEAAIAYDRAALNW 79
                        56777533.4799****999......34**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.3143489IPR001471AP2/ERF domain
SMARTSM003801.7E-53495IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-123488IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-103487IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.1E-9125193IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-9126194IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEGSPNSNNK TTPYQKISGR CSGTDTGSRR LSTRFKGVLP LERHKWGARI SFNYRAYWLG  60
TYYTEEEAAI AYDRAALNWY SDDDILNMIK DKTYSSHFPA FLVHQSLAKK TLPGSLTNAK  120
GLSYEMLFHK ELTQIDVSNA DLFQIPKEYA LQFLPPVGNN SSGNGVQMGR DSIDITFYDK  180
YYRPWTFRYS YWDTVIFYGC YHVDEEGQKR MFYMIDIHRN VPEKYIVGER YVDGINGVKL  240
FGVRIG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635830.11e-168PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U8MTA41e-166A0A1U8MTA4_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGGorai.008G232100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2074046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-32RAV family protein