PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G232300.1
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 261aa    MW: 29725.7 Da    PI: 8.5362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G232300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.6e-093581355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +kGV   + +++W A+I        + + ++lg++ t+eeAa a+++a++kl +
  Gorai.008G232300.1 35 FKGVLPLE-SHKWGARISF------NyRAYWLGTYYTEEEAAIAYDRAALKLLK 81
                        66664333.699****999......34************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-153391No hitNo description
SMARTSM003803.2E-113495IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-143491IPR016177DNA-binding domain
PROSITE profilePS5103214.4073489IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-123489IPR001471AP2/ERF domain
PfamPF008471.6E-43780IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.5E-4146187IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-11147212IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-9148212No hitNo description
Gene3DG3DSA:2.40.330.106.6E-5188218IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEGSPNSNNK TTPYQKISGR CSGTDTGSRR LSTRFKGVLP LESHKWGARI SFNYRAYWLG  60
TYYTEEEAAI AYDRAALKLL KTDAPLNLPY NIYTPQEKSF QSWYSDDEIL NMIKDKTYSS  120
HFTVHQSLAK KTLPGSLTNA KGLSYEMLFH KELTQIDVSN ADLFQIPKEY ALQFLPPVGN  180
NSSENGVFLF AKGWRDFVIM NSLNPGDTVI FYGCYHVDEE GQKRMFYMID IHRNVPEKYI  240
VSERYVDGIN GVKLFGVRIG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439443.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U8MTA41e-179A0A1U8MTA4_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGGorai.008G232300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2074046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-35RAV family protein