PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G238300.1
Common NameB456_008G238300, LOC105765139
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 774aa    MW: 84734.4 Da    PI: 5.7615
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G238300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.46.8e-1014127723374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         ++L+++Ae v +g+++ aq +Larl++++sp g p+qR+a+yf+eAL+  l+   ++ ++  pp++ +  +++ ++ a+k+fsevsP+++f
  Gorai.008G238300.1 412 DQLYKAAELVGTGNFSHAQLILARLNQQVSPVGMPLQRAAFYFKEALQVLLLM--NNPVSPPPPRSPTAFDVIFKMGAYKVFSEVSPLIQF 500
                         79*************************************************98..5556677777777789******************** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                          ++t+Nqa+lea++  +r+Hi+Dfdi+ G+QW++++q+L  R++g+pslRiT+++sp+ +++ el  +++ L +fA+e+g++fe +v+  +
  Gorai.008G238300.1 501 VNFTCNQALLEALDDTDRIHIVDFDIGFGAQWASFMQELPMRSRGAPSLRITAFASPSMHHSIELGLMRDILMQFANEIGLSFELEVVNFD 591
                         ***************************************************************************************8666 PP

                GRAS 185 rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +l++ ++++L + +   +Ea+aVn+ +   +  +++ +     ++++++vk+lsPk+vv  +q +d+n+ +F +++++a++ y+ l++sl+
  Gorai.008G238300.1 592 SLDQ-NPHSLPMFQsngNEAIAVNFPV--WSCSNRPSA----LPHLMRFVKQLSPKIVVSLDQGCDRNDLTFPQHVIHAFQSYTNLLESLD 675
                         6555.566665555556********99..444434444....456*********************************************9 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a+  ++s++ +k+Er+l+ ++i++ v  + +      e++  W+  +++aGF++v++s+++++qa++++++ +++g++ve++++slvl+W+
  Gorai.008G238300.1 676 AG-NATSDAVNKIERFLFVPRIESSVLGRLQT----PEKMPLWSTLFSSAGFTSVTFSNFTENQADCVVKRAQVRGFHVEKRQASLVLCWQ 761
                         99.799********************987776....9****************************************************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r+L+s+SaWr
  Gorai.008G238300.1 762 QRNLISASAWR 772
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.714384752IPR005202Transcription factor GRAS
PfamPF035142.4E-98412772IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MHFELQAKGA VELPGFASIC QQNKWIKQRE ANSFNFENSF YYNNEPEPTS VLHLRRSQSP  60
PTSASTLSSS FNGGATGSGG GVSSTGNINT TAATIAPPET TAPNNSKEEW ASELQPIPSE  120
LDLVPGPGGS QRCNSGLEDW ETMLSESAVS LNQDHSLLRW IAGEVDDPSF GLKQLLQSGS  180
SGPNQGVDFE GNAGVGAVDQ GPASDPIGSL ISSGSGNGIS NAALNLGGFP GSGFVPNANN  240
ENEPSCSSVE LVNNSKVLGA TVGSNCNIQI PLFSSPASNF GLPVSLPILY QQQHQEEKPR  300
IFIGPQQHPQ YPNFFLPLAQ EHHLLQPLPQ RLHSGNLELS SQIPKLPFAD AGHELFTRKQ  360
QQHMGFSQGV QYVPQQQPLM VEKKRVLVPG EEMAQPQHQY QLHQQQQATL FDQLYKAAEL  420
VGTGNFSHAQ LILARLNQQV SPVGMPLQRA AFYFKEALQV LLLMNNPVSP PPPRSPTAFD  480
VIFKMGAYKV FSEVSPLIQF VNFTCNQALL EALDDTDRIH IVDFDIGFGA QWASFMQELP  540
MRSRGAPSLR ITAFASPSMH HSIELGLMRD ILMQFANEIG LSFELEVVNF DSLDQNPHSL  600
PMFQSNGNEA IAVNFPVWSC SNRPSALPHL MRFVKQLSPK IVVSLDQGCD RNDLTFPQHV  660
IHAFQSYTNL LESLDAGNAT SDAVNKIERF LFVPRIESSV LGRLQTPEKM PLWSTLFSSA  720
GFTSVTFSNF TENQADCVVK RAQVRGFHVE KRQASLVLCW QQRNLISASA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-3443377226375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.35700.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439544.10.0PREDICTED: scarecrow-like protein 22
TrEMBLA0A0D2RL860.0A0A0D2RL86_GOSRA; Uncharacterized protein
STRINGGorai.008G238300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16534813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-112GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]