PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G241800.1

Common Name

B456_008G241800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 268aa MW: 29276.1 Da PI: 8.9231

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G241800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.5	1.5e-25	154	198	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk +e+ Gorai.008G241800.1 154 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSRKLVEA 198 79****************************************997 PP
2	QLQ	43.3	1.1e-15	85	119	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l++Ky+ a++PvP +Ll++i+k Gorai.008G241800.1 85 FTVFQLQELQLQSLIFKYMEAGLPVPNHLLLPIWK 119 8888*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.2E-5	83	119	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.749	84	119	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.2E-10	85	118	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.824	154	198	IPR014977	WRC domain
Pfam	PF08879	1.8E-21	155	197	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MEPQYTPLKI ARFADFGTLF FLYSLSLDYH ALVNLLFSFF AGIGLTNMES NMLSSGEGSP 60 PIGLGLELGR GSDHRPTGFT KSCGFTVFQL QELQLQSLIF KYMEAGLPVP NHLLLPIWKS 120 VAGSLGGLHA NPYQLYSSYL GCGPLHLEYK NGVDPEPGRC RRTDGKKWRC SKEAVPDHKY 180 CERHMHRGRQ RSRKLVEASQ ATSSGSRIIS NGNADTNLSI SLQLDNSNTS SSGSSSNLSS 240 GFIGFSPKSV LRGSNPKSES SIQFQEI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586464	1e-148	JX586464.1 Gossypium hirsutum clone NBRI_GE20296 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439589.1	1e-152	PREDICTED: growth-regulating factor 10-like
Refseq	XP_012439590.1	1e-152	PREDICTED: growth-regulating factor 10-like
TrEMBL	A0A0D2U8Z6	0.0	A0A0D2U8Z6_GOSRA; Uncharacterized protein
STRING	Gorai.008G241800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16724	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-35	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Gorai.008G241800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]