PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G241800.4

Common Name

B456_008G241800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 243aa MW: 26394.7 Da PI: 9.1913

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G241800.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.7	1.3e-25	129	173	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk +e+ Gorai.008G241800.4 129 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSRKLVEA 173 79****************************************997 PP
2	QLQ	43.5	9.5e-16	60	94	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l++Ky+ a++PvP +Ll++i+k Gorai.008G241800.4 60 FTVFQLQELQLQSLIFKYMEAGLPVPNHLLLPIWK 94 8888*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.2E-5	58	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.749	59	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-10	60	93	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.824	129	173	IPR014977	WRC domain
Pfam	PF08879	1.6E-21	130	172	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEPQYTPLKI ARFADFGIGL TNMESNMLSS GEGSPPIGLG LELGRGSDHR PTGFTKSCGF 60 TVFQLQELQL QSLIFKYMEA GLPVPNHLLL PIWKSVAGSL GGLHANPYQL YSSYLGCGPL 120 HLEYKNGVDP EPGRCRRTDG KKWRCSKEAV PDHKYCERHM HRGRQRSRKL VEASQATSSG 180 SRIISNGNAD TNLSISLQLD NSNTSSSGSS SNLSSGFIGF SPKSVLRGSN PKSESSIQFQ 240 EI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586465	1e-88	JX586465.1 Gossypium hirsutum clone NBRI_GE20297 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439589.1	1e-178	PREDICTED: growth-regulating factor 10-like
Refseq	XP_012439590.1	1e-178	PREDICTED: growth-regulating factor 10-like
TrEMBL	A0A0D2Q114	1e-178	A0A0D2Q114_GOSRA; Uncharacterized protein
STRING	Gorai.008G241800.1	1e-152	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	8e-36	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Gorai.008G241800.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]