PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G259500.1
Common NameB456_008G259500, LOC105765356
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 459aa    MW: 50007.3 Da    PI: 6.3942
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G259500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.25.8e-23201244144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+ep+rCrRtDGKkWRCsr+v +++k+CErH h+ r rsrk++e
  Gorai.008G259500.1 201 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKCRPRSRKPVE 244
                         79***************************************987 PP
2QLQ58.42.1e-20145179236
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                         +FTaaQ+q+L++Q ++yKy++a++PvP+eLl +++
  Gorai.008G259500.1 145 PFTAAQWQELERQTMIYKYMMASVPVPAELLIPLT 179
                         9******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-12144180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.866145180IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-14145178IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.619201245IPR014977WRC domain
PfamPF088791.8E-18202244IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDTRNNAFVG TEKGLGRTDE GCDVGLGLMM MQQVEESCPN KSFMAMLPPH NHNHLSSSSS  60
SSCYVEGFDG GASGGGPLVC NTSNQEPCRG DIYDVVGAAS ASVSSAAAAV VLKSLHHHSF  120
SADPPFPHHS SVGEMAAAPV NARVPFTAAQ WQELERQTMI YKYMMASVPV PAELLIPLTK  180
NPSNVAIKGS LELGFSSNSS DPEPWRCRRT DGKKWRCSRD VAPDQKYCER HSHKCRPRSR  240
KPVELPNHSN ININNNDHKS QTLHNMASDG TTNQPHQNPH FTNHHDPHFF TSSFDQSRCL  300
EWFMKGETTV PFASNPEWQR TNYGVSLQAQ HHLNEQFTPS LASLEGSLNL NQTHSQETRA  360
FIDAWSIAER EVVELEGIGS CKRPVSSNEK LPLSSLTLSM SGGGNENTQE EDDENSHHEM  420
RGTLSWMGSS PGGPLAEALC LGIATSQTTS TSSCSKST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085414e-71DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439849.10.0PREDICTED: growth-regulating factor 8 isoform X1
TrEMBLA0A0D2TCU90.0A0A0D2TCU9_GOSRA; Uncharacterized protein
STRINGGorai.008G259500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.15e-49growth-regulating factor 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]