PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G259500.3
Common NameB456_008G259500, LOC105765356
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 457aa    MW: 49809.1 Da    PI: 6.3942
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G259500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.35.8e-23199242144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+ep+rCrRtDGKkWRCsr+v +++k+CErH h+ r rsrk++e
  Gorai.008G259500.3 199 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKCRPRSRKPVE 242
                         79***************************************987 PP
2QLQ58.52.1e-20144178236
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                         +FTaaQ+q+L++Q ++yKy++a++PvP+eLl +++
  Gorai.008G259500.3 144 PFTAAQWQELERQTMIYKYMMASVPVPAELLIPLT 178
                         9******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-12143179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.866144179IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-14144177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.619199243IPR014977WRC domain
PfamPF088791.8E-18200242IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDTRNNAFVG TEKGLGRTDE GCDVGLGLMM MQQVEESCPN KSFMAMLPPH NHNHLSSSSS  60
SSCYVEGFDG GASGGGPLVC NTSNQEPCRG DIYDVVGAAS ASVSSAAAAV VLKSLHHHSF  120
SADPPFPHHS SGEMAAAPVN ARVPFTAAQW QELERQTMIY KYMMASVPVP AELLIPLTKN  180
PSNAIKGSLE LGFSSNSSDP EPWRCRRTDG KKWRCSRDVA PDQKYCERHS HKCRPRSRKP  240
VELPNHSNIN INNNDHKSQT LHNMASDGTT NQPHQNPHFT NHHDPHFFTS SFDQSRCLEW  300
FMKGETTVPF ASNPEWQRTN YGVSLQAQHH LNEQFTPSLA SLEGSLNLNQ THSQETRAFI  360
DAWSIAEREV VELEGIGSCK RPVSSNEKLP LSSLTLSMSG GGNENTQEED DENSHHEMRG  420
TLSWMGSSPG GPLAEALCLG IATSQTTSTS SCSKST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085414e-71DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439852.10.0PREDICTED: growth-regulating factor 8 isoform X4
TrEMBLA0A0D2U9T90.0A0A0D2U9T9_GOSRA; Uncharacterized protein
STRINGGorai.008G259500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.18e-50growth-regulating factor 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]