PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G259500.4

Common Name

B456_008G259500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 337aa MW: 37454.6 Da PI: 6.8266

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G259500.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.8	3.8e-23	79	122	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCsr+v +++k+CErH h+ r rsrk++e Gorai.008G259500.4 79 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKCRPRSRKPVE 122 79***************************************987 PP
2	QLQ	59	1.4e-20	23	57	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTaaQ+q+L++Q ++yKy++a++PvP+eLl +++ Gorai.008G259500.4 23 PFTAAQWQELERQTMIYKYMMASVPVPAELLIPLT 57 9******************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.2E-12	22	58	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.866	23	58	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.1E-15	23	56	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.619	79	123	IPR014977	WRC domain
Pfam	PF08879	1.2E-18	80	122	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MHGVQNLMKV GEMAAAPVNA RVPFTAAQWQ ELERQTMIYK YMMASVPVPA ELLIPLTKNP 60 SNVAIKGSLE LGFSSNSSDP EPWRCRRTDG KKWRCSRDVA PDQKYCERHS HKCRPRSRKP 120 VELPNHSNIN INNNDHKSQT LHNMASDGTT NQPHQNPHFT NHHDPHFFTS SFDQSRCLEW 180 FMKGETTVPF ASNPEWQRTN YGVSLQAQHH LNEQFTPSLA SLEGSLNLNQ THSQETRAFI 240 DAWSIAEREV VELEGIGSCK RPVSSNEKLP LSSLTLSMSG GGNENTQEED DENSHHEMRG 300 TLSWMGSSPG GPLAEALCLG IATSQTTSTS SCSKST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ108541	3e-71	DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439849.1	0.0	PREDICTED: growth-regulating factor 8 isoform X1
TrEMBL	A0A0D2T727	0.0	A0A0D2T727_GOSRA; Uncharacterized protein
STRING	Gorai.008G259500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-49	growth-regulating factor 8

Link Out ? help Back to Top
Phytozome	Gorai.008G259500.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]