PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G265600.2
Common NameB456_008G265600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 402aa    MW: 43696.2 Da    PI: 8.3236
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G265600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-2464106244
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          epgrCrRtDGKkWRCsr++ +++k+CErHlhrgr rsrk++e
  Gorai.008G265600.2  64 VEPGRCRRTDGKKWRCSRDAAPDQKYCERHLHRGRPRSRKPVE 106
                         59**************************************987 PP
2QLQ27.87.8e-11839233
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33
                        +FT +Q  +L +Q++++Ky+ a+  vP +Ll 
  Gorai.008G265600.2  8 PFTFSQYKELQRQVMIFKYMKASIAVPLDLLI 39
                        8**************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009510.0036743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-7840IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.156843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.60463107IPR014977WRC domain
PfamPF088791.7E-2065106IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAASLEFPFT FSQYKELQRQ VMIFKYMKAS IAVPLDLLIP TIGSPSVSVA SYSAMARFSG  60
RADVEPGRCR RTDGKKWRCS RDAAPDQKYC ERHLHRGRPR SRKPVELPNK KTRHTLSQAH  120
PSSSSTTRPQ FVAQPLNQNQ TTCFLGQPSD KAAPFWPFTS VSFYKETRTS DWDMNELIPL  180
ADQQWHHLMQ IGTATEGSLF NAVNQSYGKE PLNLISCPNF GPAEDQQRNT SPWLLNPEIV  240
PVEKSPPRGF IDAWSTAVSD DHLANTGTET SVNGKLTLSS LSLSMGINSF RDNETGPIRM  300
GLGVCEYDQE NHEYASKCHL SSWLAPGSTP GGPLAEVLRP SATASSPVAG NGNSCSPAMT  360
AVSSPSGVLQ KALASWSDSS GSSSPTIVCS RAKPEIGLML A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7355320.0EU735532.1 Gossypium arboreum small heat shock protein gene, promoter region and partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737257.10.0PREDICTED: growth-regulating factor 7-like isoform X1
RefseqXP_016737258.10.0PREDICTED: growth-regulating factor 7-like isoform X2
TrEMBLA0A0D2RMW50.0A0A0D2RMW5_GOSRA; Uncharacterized protein
TrEMBLA0A0D2T7G40.0A0A0D2T7G4_GOSRA; Uncharacterized protein
STRINGGorai.008G265600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-33growth-regulating factor 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]