PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G280400.1

Common Name

B456_008G280400, LOC105762554

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 138aa MW: 15547.8 Da PI: 9.0105

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G280400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125	3.8e-39	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaC++lrr+C++ C+++pyfp ++p++f +h+++Gasnv kll++lp + r++a++sl+ eA+ r++dPvyG+vg+i+ lqqq++ ++ Gorai.008G280400.1 5 RCAACRYLRRRCPPACIFSPYFPPNNPQRFVSIHRIYGASNVAKLLQQLPSHLRTQAADSLYLEAQYRIEDPVYGCVGLISLLQQQIHDVE 95 6**************************************************************************************** PP DUF260 92 aelallkee 100 +la++++e Gorai.008G280400.1 96 RQLAMTQAE 104 **99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.292	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-39	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MNPGRCAACR YLRRRCPPAC IFSPYFPPNN PQRFVSIHRI YGASNVAKLL QQLPSHLRTQ 60 AADSLYLEAQ YRIEDPVYGC VGLISLLQQQ IHDVERQLAM TQAEIAFRAR HPQAVESNLL 120 NNVGNPSFSN QASSWFM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435764.1	2e-98	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	1e-50	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A0D2RNU9	5e-97	A0A0D2RNU9_GOSRA; Uncharacterized protein
STRING	Gorai.008G280400.1	8e-98	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	7e-40	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Gorai.008G280400.1
Entrez Gene	105762554

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]