PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G280600.1
Common NameB456_008G280600, LOC105765573
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 208aa    MW: 23339 Da    PI: 8.965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G280600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-174595155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr++   g+Wv+e+r+p   +k+ r++lg+f ta++Aa+a++ a+ +l+g
  Gorai.008G280600.1 45 PVYRGVRRRN-PGKWVSEVREP---NKKSRIWLGTFPTADMAARAHDVAAIALRG 95
                        68*****887.9******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-124595IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3146105IPR001471AP2/ERF domain
PROSITE profilePS5103222.24746103IPR001471AP2/ERF domain
SMARTSM003807.3E-3146109IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-2146105IPR016177DNA-binding domain
PRINTSPR003671.3E-84758IPR001471AP2/ERF domain
CDDcd000181.28E-2847105No hitNo description
PRINTSPR003671.3E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVDSGSVSES GTDRPVNFSD DYVMLASSYP KRRAGRKKFR ETRHPVYRGV RRRNPGKWVS  60
EVREPNKKSR IWLGTFPTAD MAARAHDVAA IALRGKSACL NFADSAWNLP VPASSDRKDI  120
QKTVAEVAET FRTAEHSSGN SRNDAKRSEN TEMEKGFYLD EEALFGTQRF WANMAAGMMM  180
SPPRSGHDGG WEEHEVDDYV PLWSYSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14441021271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4090600.0DQ409060.1 Gossypium hirsutum DREB1-like transcription factor (DREB1L) mRNA, complete cds.
GenBankKR2332520.0KR233252.1 Gossypium barbadense C-repeat binding factor 3-like protein (CBF3L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440211.11e-153PREDICTED: dehydration-responsive element-binding protein 1D isoform X1
RefseqXP_012440212.11e-153PREDICTED: dehydration-responsive element-binding protein 1D isoform X2
SwissprotQ9FJ932e-67DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0D2RNV41e-152A0A0D2RNV4_GOSRA; Uncharacterized protein
STRINGGorai.008G280600.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-59C-repeat-binding factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  4. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  5. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  6. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]