PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G282300.1

Common Name

B456_008G282300, LOC105762556

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 234aa MW: 25791.1 Da PI: 5.1416

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G282300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.6e-11	60	112	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr llP +++K ++ +v YIk+Lq Gorai.008G282300.1 60 KKLMHRDVERQRRQEMATLYASLRNLLPLeY---TKGKRAISDHMNGTVMYIKYLQ 112 5789***********************77...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.84E-13	56	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.60E-10	58	116	No hit	No description
PROSITE profile	PS50888	12.455	59	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-8	60	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-10	60	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDELFLFQFP SIPNPQNETP QDKVLDYVVP MDGSGNTHLY SSMGSGATGN DDDDDNGEKK 60 KLMHRDVERQ RRQEMATLYA SLRNLLPLEY TKGKRAISDH MNGTVMYIKY LQKRVSELSY 120 KRDELKKVLN STGFDHGMSS DGAVLSTAVV HQSLDGGVEV VISTGFGARA LTLSRVLELL 180 VQEGLDVVSC VSTRINGGLA HTIQSEVTDL TLVDVPRLEQ KLSEEISSLN RIS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX618280	1e-136	JX618280.1 Gossypium hirsutum clone NBRI_GE63693 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435765.1	1e-171	PREDICTED: transcription factor bHLH120-like isoform X1
Swissprot	Q9STJ6	2e-43	BH126_ARATH; Transcription factor bHLH126
TrEMBL	A0A0D2Q3D9	1e-170	A0A0D2Q3D9_GOSRA; Uncharacterized protein
STRING	Gorai.008G282300.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	3e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G282300.1
Entrez Gene	105762556

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]