PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G289800.2
Common NameB456_008G289800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 315aa    MW: 36106.9 Da    PI: 6.944
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G289800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.96.1e-221978357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Gorai.008G289800.2 19 SRWNPTPEQLRTLEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 78
                        7*****************99**************************************97 PP
2Wus_type_Homeobox116.11.6e-371880365
   Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Gorai.008G289800.2 18 SSRWNPTPEQLRTLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 80
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.7E-51683IPR001356Homeobox domain
SuperFamilySSF466893.42E-121984IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-91978IPR009057Homeodomain-like
PfamPF000461.4E-191978IPR001356Homeobox domain
CDDcd000865.13E-62080No hitNo description
PROSITE profilePS5007111.0132479IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGDQNKREFN TQPAVVVSSR WNPTPEQLRT LEELYRRGTR TPSADQIQHI TAQLRRYGKI  60
EGKNVFYWFQ NHKARERQKR RRQMESTQDD HPDNFERKDS ETNRTGYEVE QTKNWALPIN  120
CSTLAEESVS IQMAAKAAVS ECRADGWIQF EERELQGSKN FVERNDTWQH KMQFSYSCLS  180
PVLSPNPTST TAAISTVTTV APPPPIRPMD PKHQYQHQQL FKTHHGLNNI FKSPCRYNNN  240
NANVFDFNFV RNQEATLGEC DSQTLQLFPL RSGNDDGSDD SNEKENEISI ATAPGNANLG  300
GPNYQFFEFL PLKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440326.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A0D2Q3Y90.0A0A0D2Q3Y9_GOSRA; Uncharacterized protein
STRINGGorai.008G289800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.16e-49WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]