PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G293100.1
Common NameB456_008G293100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 258aa    MW: 29924.8 Da    PI: 9.0079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G293100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.6e-143884147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-.HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt.lkqcksrwqky 47
                        rg W + Ede+l + v+++G+++W++Ia++++ gR+ +k+c++rw++ 
  Gorai.008G293100.1 38 RGHWRPAEDEKLRESVERYGPHNWNAIAQKLQ-GRSaGKSCRLRWFNQ 84
                        899*****************************.999459******996 PP
2Myb_DNA-binding60.44e-1991134146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Gorai.008G293100.1  91 RSPFTEEEEERLLSAHRIHGNR-WAVIARLFP-GRTDNAVKNHWHV 134
                         789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.7133385IPR017930Myb domain
SMARTSM007171.9E-103787IPR001005SANT/Myb domain
PfamPF002491.3E-133884IPR001005SANT/Myb domain
SuperFamilySSF466892.96E-2738132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-243992IPR009057Homeodomain-like
CDDcd001671.29E-114183No hitNo description
PROSITE profilePS5129426.2786140IPR017930Myb domain
SMARTSM007172.8E-1690138IPR001005SANT/Myb domain
PfamPF002493.6E-1691133IPR001005SANT/Myb domain
CDDcd001678.16E-1393133No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2193139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVDSPPSTIF ILLSALLFPI FLGVEFFIEL KDQQMCSRGH WRPAEDEKLR ESVERYGPHN  60
WNAIAQKLQG RSAGKSCRLR WFNQLDPRIN RSPFTEEEEE RLLSAHRIHG NRWAVIARLF  120
PGRTDNAVKN HWHVIMARRC RQRSSLYAKT SHTNPSKPLH HSQMGAGHGF LPLLHKYKQG  180
FPHNTCSPLN PNHCVTTTQD KKEAIEFYDF LQVNTDSNNK SEVTENSRRD DEEVNQQEAM  240
PLMEHHTKAR PSFFNFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31381407108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stamen (PubMed:19325888). Present in roots and siliques, and, at low levels, in leaves and flowers (PubMed:21399993). Expressed in stems, especially in fibers and, at lower levels, in xylems (PubMed:18952777, PubMed:21399993). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21399993}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5903082e-53JX590308.1 Gossypium hirsutum clone NBRI_GE25197 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440359.11e-167PREDICTED: transcriptional activator Myb-like
SwissprotQ6R0C42e-75MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A0D2RPJ80.0A0A0D2RPJ8_GOSRA; Uncharacterized protein
STRINGGorai.008G293100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28182769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-78myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  4. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]