PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G002200.2
Common NameB456_009G002200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 225aa    MW: 25607.1 Da    PI: 4.3271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G002200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-1462105755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           Er+RR+++N++++ Lr l+P+      +K++Ka+i + A++YI++Lq
  Gorai.009G002200.2  62 LSERNRRKKLNQRLFALRALVPNI-----TKMDKASIIKDAIDYIQQLQ 105
                         57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.34255104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-1558109No hitNo description
SuperFamilySSF474596.28E-1858119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1760123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-1761110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-1261105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLWMENMENV SEEYNQNIWE PNYVFENEEY SWAMDELYDN DCSSSPDGAP ASASLSNSNN  60
ILSERNRRKK LNQRLFALRA LVPNITKMDK ASIIKDAIDY IQQLQEQEAT LQADIMELEN  120
NNNNNPKNHD LPMLLTSKNT SVFDSPIQLL QLNVTPMGDN TLLVSITCTK RADTMLKLCQ  180
LFESLNLKII TANLTVVSAN LFNTLFIRVS YISFSYNILC FLLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1559120869Transcription factor MYC2
5gnj_B7e-1559120869Transcription factor MYC2
5gnj_E7e-1559120869Transcription factor MYC2
5gnj_F7e-1559120869Transcription factor MYC2
5gnj_G7e-1559120869Transcription factor MYC2
5gnj_I7e-1559120869Transcription factor MYC2
5gnj_M7e-1559120869Transcription factor MYC2
5gnj_N7e-1559120869Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6150478e-43JX615047.1 Gossypium hirsutum clone NBRI_GE58830 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448201.11e-150PREDICTED: transcription factor bHLH35-like isoform X2
SwissprotQ2HIV96e-64BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0D2TGQ91e-162A0A0D2TGQ9_GOSRA; Uncharacterized protein
STRINGGorai.009G002200.11e-150(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-51bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]