PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G016700.2
Common NameB456_009G016700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 180aa    MW: 20277.2 Da    PI: 8.5894
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G016700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY189.51.6e-5861524170
               YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                         + ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhCt+l svn+a a q ++ ++           ++          + +ke+ +s+
  Gorai.009G016700.2   6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCTNLWSVNMAAAFQSVSWQDI----------QD----------YRMKESGSSS 76 
                         5689****************************************999988877766663..........22..........3333333333 PP

               YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         + +++ +    ++ v++   v+rPP krqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  Gorai.009G016700.2  77 KCNKFPMRPPANNVVTEERVVNRPPGKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 152
                         4444444445555666666799****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-678152IPR006780YABBY protein
SuperFamilySSF470952.75E-896145IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.6E-4100146IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSNCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLLDIVTVR CGHCTNLWSV NMAAAFQSVS  60
WQDIQDYRMK ESGSSSKCNK FPMRPPANNV VTEERVVNRP PGKRQRVPSA YNQFIKEEIQ  120
RIKANNPDIS HREAFSTAAK NWAHFPHIHF GLMLEANNQT KLHDASEKHI MSRTALFNK*
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0902168e-61BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447992.11e-130PREDICTED: axial regulator YABBY 5-like
SwissprotQ8GW467e-84YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A0D2THK51e-132A0A0D2THK5_GOSRA; Uncharacterized protein
STRINGGorai.009G016700.11e-130(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.26e-79YABBY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]