PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G026600.1

Common Name

B456_009G026600, LOC105770611

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 333aa MW: 35933.8 Da PI: 7.4783

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G026600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	222	260	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Gorai.009G026600.1 222 RKEKLGDRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 260 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.496	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-10	220	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.22E-5	220	264	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-7	224	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MNRGVLQSSP VQQLMAGNPN WWNINTMRPP THHHQQAAAV AAAPSPFLHP PPTTFFSHTP 60 TSSSSSSSSS SLPVPSWHDN NQELPESWSQ LLLGGLVGEE EKGGDIGQFQ ALHQVSNANS 120 VVDVKQENSA SSYVYGHASE DFHHHQANKP AWFHQISSAA SSPKSSVTSF SSNMLDFSGN 180 KAEHGRQPQP DRSSECNSTA TGGPLKKPRV QPSATQSTLK VRKEKLGDRI TSLHQLVSPF 240 GKTDTASVLS EAIGYIRFLQ SQIEALSLPY LGSGSANMRH QQQSDCKEEA KKDLRSRGLC 300 LVPVSCTLEV WSGDNGADYW APPPALGAGF FR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527918	0.0	HQ527918.1 Gossypium herbaceum clone NBRI_B2_1719 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447341.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	2e-71	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0D2TC89	0.0	A0A0D2TC89_GOSRA; Uncharacterized protein
STRING	Gorai.009G026600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	9e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G026600.1
Entrez Gene	105770611

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]