PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G026600.2

Common Name

B456_009G026600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 330aa MW: 35550.3 Da PI: 7.0742

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G026600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.0005	225	257	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L +l+ + +K + a++L +A+ YI+ Lq Gorai.009G026600.2 225 DRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 257 6777788888776.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.614	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-9	220	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.40E-4	221	261	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-7	221	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MNRGVLQSSP VQQLMAGNPN WWNINTMRPP THHHQQAAAV AAAPSPFLHP PPTTFFSHTP 60 TSSSSSSSSS SLPVPSWHDN NQELPESWSQ LLLGGLVGEE EKGGDIGQFQ ALHQVSNANS 120 VVDVKQENSA SSYVYGHASE DFHHHQANKP AWFHQISSAA SSPKSSVTSF SSNMLDFSGN 180 KAEHGRQPQP DRSSECNSTA TGGPLKKPRV QPSATQSTLK EKLGDRITSL HQLVSPFGKT 240 DTASVLSEAI GYIRFLQSQI EALSLPYLGS GSANMRHQQQ SDCKEEAKKD LRSRGLCLVP 300 VSCTLEVWSG DNGADYWAPP PALGAGFFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527918	0.0	HQ527918.1 Gossypium herbaceum clone NBRI_B2_1719 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447341.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	8e-67	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0D2UF50	0.0	A0A0D2UF50_GOSRA; Uncharacterized protein
STRING	Gorai.009G026600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G026600.2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]