PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G026600.4
Common NameB456_009G026600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 305aa    MW: 33215 Da    PI: 9.3219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G026600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000172222601255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gorai.009G026600.4 222 RKEKLGDRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 260
                         6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.496210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-10220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-5220264No hitNo description
Gene3DG3DSA:4.10.280.101.2E-7224266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNRGVLQSSP VQQLMAGNPN WWNINTMRPP THHHQQAAAV AAAPSPFLHP PPTTFFSHTP  60
TSSSSSSSSS SLPVPSWHDN NQELPESWSQ LLLGGLVGEE EKGGDIGQFQ ALHQVSNANS  120
VVDVKQENSA SSYVYGHASE DFHHHQANKP AWFHQISSAA SSPKSSVTSF SSNMLDFSGN  180
KAEHGRQPQP DRSSECNSTA TGGPLKKPRV QPSATQSTLK VRKEKLGDRI TSLHQLVSPF  240
GKTDTASVLS EAIGYIRFLQ SQIEALSLPY LGSGSANMRH QQQSVIIKLY WIHYLKMKLG  300
GREF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5279181e-132HQ527918.1 Gossypium herbaceum clone NBRI_B2_1719 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447341.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D11e-53BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2Q7U10.0A0A0D2Q7U1_GOSRA; Uncharacterized protein
STRINGGorai.009G026600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]