PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G031400.2
Common NameB456_009G031400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 227aa    MW: 25639.4 Da    PI: 7.3763
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G031400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA32.71e-10170190121
                GATA   1 CsnCgttkTplWRrgpdgnkt 21 
                         C+ C+ttkTplWR+gp+g+k 
  Gorai.009G031400.2 170 CADCNTTKTPLWRSGPRGPKV 190
                         *******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.328164187IPR000679Zinc finger, GATA-type
SMARTSM004019.4E-4164211IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-5164188No hitNo description
Gene3DG3DSA:3.30.50.101.0E-7168190IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.3E-8170190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTSSNCYSSL YPFPIDLNED DQHQHHQLFN LISQPSSSSS SSSSSSSPST SLTCPFSFSP  60
TVQHQQAAFY QSLPQQFHDD QQDQEKIHVP QDGPLRSDCE LRLSIWKKEE RVETHHQSHD  120
SAKWMPSKTR MMSSDHTDLS NSPTPKSEDH QEQKQPSSSP DNNNSTIRVC ADCNTTKTPL  180
WRSGPRGPKV LKFPVFFFFL IQTLALKSNV KSTKAIATQF LLKIFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270200.0HQ527020.1 Gossypium herbaceum clone NBRI_C2_559 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447374.11e-137PREDICTED: GATA transcription factor 21-like
TrEMBLA0A0D2Q8491e-164A0A0D2Q849_GOSRA; Uncharacterized protein
STRINGGorai.009G031400.11e-136(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-14cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]