PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G038500.1

Common Name

B456_009G038500, LOC105769282

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 504aa MW: 54145.5 Da PI: 4.8273

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G038500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.3e-11	277	322	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka+iL + + Y+k Lq Gorai.009G038500.1 277 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASILDEIIGYVKFLQ 322 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.20E-11	270	326	No hit	No description
SuperFamily	SSF47459	1.14E-16	270	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.882	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-16	274	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-8	277	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-13	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MDDYLDQYFS SSSWSDVNVK ERSYWVHNEP DQPNEVFPSS NFNSIECLAA HNTPPLVHNR 60 GSGCSVEHGL LYGEGGLQMN GENCSGNSSQ EMMNGSFELR NLGLQLNTDV HSSGSSSLVS 120 LNDVPVVGDM IPSLSFNERG RMISNGGESS EFRRSFTGLE TLSPIPQLWH LQPYDSVSSL 180 PTLVGQTKVD DEGNINRFIE IDEILQPENL SASINSKGQQ DMQNSFYSSF PADHPITKTM 240 IGLPSLVQGA SPNLNNGSDR TAKPRVRARR GQATDPHSIA ERLRREKIAE RMKNLQELVP 300 NSNKTDKASI LDEIIGYVKF LQLQVKVLSM SRLGAAAAVV PLITDGRAEV SNGLSLAPLA 360 GQGVDFSPSP DQVVFEQEVV KLMESNMTMA MQYLQSKGFC LMPVALAAAI SNVKSSTSSS 420 SSSVPASDES KKLGFTNSTL INNTCSSSSS SSSNSSGSLP GVGIPNINAD GNFMTGMLGS 480 DIMAKGCTGT FKQEELNTLC TAK*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MDDYLDQYFS SSSWSDVNVK ERSYWVHNEP DQPNEVFPSS NFNSIECLAA HNTPPLVHNR  60
GSGCSVEHGL LYGEGGLQMN GENCSGNSSQ EMMNGSFELR NLGLQLNTDV HSSGSSSLVS  120
LNDVPVVGDM IPSLSFNERG RMISNGGESS EFRRSFTGLE TLSPIPQLWH LQPYDSVSSL  180
PTLVGQTKVD DEGNINRFIE IDEILQPENL SASINSKGQQ DMQNSFYSSF PADHPITKTM  240
IGLPSLVQGA SPNLNNGSDR TAKPRVRARR GQATDPHSIA ERLRREKIAE RMKNLQELVP  300
NSNKTDKASI LDEIIGYVKF LQLQVKVLSM SRLGAAAAVV PLITDGRAEV SNGLSLAPLA  360
GQGVDFSPSP DQVVFEQEVV KLMESNMTMA MQYLQSKGFC LMPVALAAAI SNVKSSTSSS  420
SSSVPASDES KKLGFTNSTL INNTCSSSSS SSSNSSGSLP GVGIPNINAD GNFMTGMLGS  480
DIMAKGCTGT FKQEELNTLC TAK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615324	1e-172	JX615324.1 Gossypium hirsutum clone NBRI_GE59251 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445260.1	0.0	PREDICTED: uncharacterized protein LOC105769282
TrEMBL	A0A0D2TJ48	0.0	A0A0D2TJ48_GOSRA; Uncharacterized protein
STRING	Gorai.009G038500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16266	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	2e-56	LJRHL1-like 3

Link Out ? help Back to Top
Phytozome	Gorai.009G038500.1
Entrez Gene	105769282

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]