PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G040800.1
Common NameB456_009G040800, LOC105765990
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 200aa    MW: 23133.2 Da    PI: 8.6193
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G040800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.87e-201764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd++l+++v+ +G+++Wk++a++ g +R++k+c++rw +yl
  Gorai.009G040800.1 17 RGAWTAEEDQKLAQVVEIHGPKRWKAVAAKAGINRCGKSCRLRWMNYL 64
                        89******************************99************97 PP
2Myb_DNA-binding50.83.9e-1670115148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Gorai.009G040800.1  70 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115
                         78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.2891268IPR017930Myb domain
SuperFamilySSF466893.52E-3015111IPR009057Homeodomain-like
SMARTSM007172.7E-171666IPR001005SANT/Myb domain
PfamPF002494.4E-201764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-251871IPR009057Homeodomain-like
CDDcd001676.55E-121964No hitNo description
SMARTSM007171.9E-1569117IPR001005SANT/Myb domain
PROSITE profilePS5129420.91869119IPR017930Myb domain
PfamPF002491.6E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2572120IPR009057Homeodomain-like
CDDcd001679.31E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MPMAPTSTKC SKKEVNRGAW TAEEDQKLAQ VVEIHGPKRW KAVAAKAGIN RCGKSCRLRW  60
MNYLRPNIKR GNISDQEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKIK  120
QNEKQTRMQE PVLENSKVSE REEPLHKASE EGSSKRDDEY STSCFNGDSS LFDLYNKEPL  180
ELEWMSHFFE TDEIWLNLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-31141191105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-301411924128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5822974e-66JX582297.1 Gossypium hirsutum clone NBRI_GE15106 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440738.11e-147PREDICTED: transcription factor MYB114-like isoform X2
SwissprotQ388505e-53MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0D2RTT01e-146A0A0D2RTT0_GOSRA; Uncharacterized protein
STRINGGorai.009G040800.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-55myb domain protein 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]