PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G060200.1
Common NameB456_009G060200, LOC105770127
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 426aa    MW: 46817.3 Da    PI: 6.162
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G060200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.7e-083744072154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Gorai.009G060200.1 374 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 407
                         469*****************************87 PP
2ELK28.82.8e-10328349122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Gorai.009G060200.1 328 ELKHELKQGYKEKIVDIREEIL 349
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-17160204IPR005540KNOX1
PfamPF037901.9E-16162202IPR005540KNOX1
SMARTSM012562.5E-29216271IPR005541KNOX2
PfamPF037912.7E-21220270IPR005541KNOX2
PROSITE profilePS512139.969328348IPR005539ELK domain
SMARTSM011886.1E-4328349IPR005539ELK domain
PfamPF037899.9E-7328349IPR005539ELK domain
PROSITE profilePS5007111.742348411IPR001356Homeobox domain
SuperFamilySSF466896.42E-16350414IPR009057Homeodomain-like
SMARTSM003893.7E-11350415IPR001356Homeobox domain
CDDcd000869.66E-12351412No hitNo description
Gene3DG3DSA:1.10.10.603.4E-25355412IPR009057Homeodomain-like
PfamPF059209.8E-18368407IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAFHPNHLSQ DLPLHHFTVQ QQQTNQLPGT TAPNWLNIAL LRSQQESQPT QPHAHFSDPN  60
FLNLHTATTA SESTSASQAP NQWLSPSSSS LLQRNHSGVV DDVAAVAAGG GGVGMETMVT  120
VESGELKSSN SESMNNNNKS EGLAVESGGG GDGAVNWQNA RYKAEVLAHP LYEQLLSAHV  180
ACLRIATPVD QLPRIDAQLA QSLHVVAKYS ALGGGAQGLV GDDKELDQFM THYVLLLCSF  240
KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSLGEGTGA TMSDDDEEQI DSDANLLDGS  300
MEGPDSLGFG PLVPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGD  360
TTSVLKAWWQ SHSKWPYPTE EDKAKLVQET GLQLKQINNW FINQRKRNWH SNPSTSTVLK  420
NKRKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404424RKRNWHSNPSTSTVLKNKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446638.10.0PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_012446639.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0D2TEL00.0A0A0D2TEL0_GOSRA; Uncharacterized protein
STRINGGorai.009G060200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]