PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G062300.1
Common NameB456_009G062300, LOC105769109
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 314aa    MW: 34215.6 Da    PI: 9.1323
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G062300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30155213259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh 
  Gorai.009G062300.1 155 RDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHA 213
                         7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-29148214IPR003657WRKY domain
PROSITE profilePS5081125.649149215IPR003657WRKY domain
SuperFamilySSF1182903.79E-25151214IPR003657WRKY domain
SMARTSM007749.2E-35154214IPR003657WRKY domain
PfamPF031061.3E-24156212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MESTWVDTTL DLNINSSHNT IKVLKRESSG KLADSDVKVP VKQETGALVE ELNRIIAENK  60
KLTEMLTVLC ERYSSLQNQY MELVSRNSGS DATAATSKKR KAECEDYVPM IGFSGKAESS  120
FSDEDSCKKP KDCIKAKISR AYVRTNPSDN SLIVRDGYQW RKYGQKVTRD NPSPRAYFKC  180
SFAPSCPVKK KVQRSAEDPS ILVATYEGEH NHAQHSTPAL SSLSPNSGTS NPRSAPVSSS  240
SSAPTKSSPP TVTLELMKPT GLGNDTKNPT QQVDEPAIQK ILVQQMAASL TRDPTFTAAL  300
AAAISGKVLD HKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-201532121674Probable WRKY transcription factor 4
2lex_A1e-201532121674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310780.0KF031078.1 Gossypium hirsutum WRKY transcription factor 24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444987.10.0PREDICTED: probable WRKY transcription factor 40 isoform X1
TrEMBLA0A0D2RV400.0A0A0D2RV40_GOSRA; Uncharacterized protein
STRINGGorai.009G062300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-81WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]