PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G068400.5

Common Name

B456_009G068400, LOC105768068

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 343aa MW: 38672.6 Da PI: 5.224

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G068400.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	3	27	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ + +H+++ H Gorai.009G068400.5 3 YSCGVCGKGYRSSKAYSQHLKSraH 27 99******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.743	3	32	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.51E-5	3	39	No hit	No description
SMART	SM00355	0.19	3	27	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	5	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.89E-8	103	217	No hit	No description
Pfam	PF12756	2.7E-26	117	218	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	33	166	193	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MLYSCGVCGK GYRSSKAYSQ HLKSRAHIMQ ASQGTNHPQE VKAIIKPLPR RTVNKPPQPR 60 DRNDDESQDE WEEVDPEEEL VGQAANSLTH LNVTEDGAGD EMEEEEEEEE ELDPCCCFMC 120 DLEHDTIESC MVHMHKLHGF FIPDVEYLKD PEGLLTYLGL KVKRDFMCLY CNERCHPFAS 180 LEAVRKHMAA KGHCKVHYGD GDEEEEAELE EFYDYSSSYV DESGKQLVAA GDTGNSVELV 240 GGSELVITKR SDEGILSKTL GSREYMRYYR QKPRPSPANN MAITAALASR YRSMGIATVQ 300 SREQMVRMKV MKAMNRGGVE AMRTKVGVKN NVIRNLPKNV PY*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MLYSCGVCGK GYRSSKAYSQ HLKSRAHIMQ ASQGTNHPQE VKAIIKPLPR RTVNKPPQPR  60
DRNDDESQDE WEEVDPEEEL VGQAANSLTH LNVTEDGAGD EMEEEEEEEE ELDPCCCFMC  120
DLEHDTIESC MVHMHKLHGF FIPDVEYLKD PEGLLTYLGL KVKRDFMCLY CNERCHPFAS  180
LEAVRKHMAA KGHCKVHYGD GDEEEEAELE EFYDYSSSYV DESGKQLVAA GDTGNSVELV  240
GGSELVITKR SDEGILSKTL GSREYMRYYR QKPRPSPANN MAITAALASR YRSMGIATVQ  300
SREQMVRMKV MKAMNRGGVE AMRTKVGVKN NVIRNLPKNV PY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6rzz_u	4e-18	117	308	164	368	Cytoplasmic 60S subunit biogenesis factor REI1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250\|UniProtKB:P38344, ECO:0000269\|PubMed:24038679}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443252.1	0.0	PREDICTED: zinc finger protein 622-like
Refseq	XP_012443253.1	0.0	PREDICTED: zinc finger protein 622-like
Swissprot	Q8H1G5	1e-153	REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBL	A0A0D2TEY1	0.0	A0A0D2TEY1_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2TKT0	0.0	A0A0D2TKT0_GOSRA; Uncharacterized protein
STRING	Gorai.009G068400.1	0.0	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.009G068400.5
Entrez Gene	105768068

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiol., 2013. 163(4): p. 1623-39 [PMID:24038679] Beine-Golovchuk O, et al. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiol., 2018. 176(3): p. 2251-2276 [PMID:29382692]