PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G075300.3

Common Name

B456_009G075300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 247aa MW: 26136.2 Da PI: 9.7304

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G075300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	121.1	1.4e-37	131	237	4	109
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklss 93 +a+CqdCGnqakkdC+++RCRtCCksr+fdC thvkstWvpaa+rr+rq ++ a++ a + ++a +k++r +s +++++s+t++s+ Gorai.009G075300.3 131 SGATCQDCGNQAKKDCSYRRCRTCCKSRSFDCPTHVKSTWVPAARRRDRQLMTVGATAAGAGLSgSTAGPKKPRLRTS-QTTTASHTSTSN 220 5679*********************************************99888777766655547888888988755.555555555555 PP DUF702 94 .aeskkeletsslPeev 109 ++++++l+t s P+ + Gorai.009G075300.3 221 aTTPPRSLDTCSSPQSL 237 15667889998888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-32	132	223	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.0E-27	134	176	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGMVGLRDFV LVTPASFNHH HRHHHTQDSI MANDQINGPN DPTALGVGVI PLLTAAPCLA 60 PHHAEDTDLL NNNDRSKFTG MRLWQKPNSS HYLIKSSSNP NNHNSSSMNL IQSSGGIGGT 120 GSGSGGSGLS SGATCQDCGN QAKKDCSYRR CRTCCKSRSF DCPTHVKSTW VPAARRRDRQ 180 LMTVGATAAG AGLSGSTAGP KKPRLRTSQT TTASHTSTSN ATTPPRSLDT CSSPQSLYLF 240 LFRCGV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441791.1	1e-159	PREDICTED: uncharacterized protein LOC105766761
Refseq	XP_016689288.1	1e-171	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBL	A0A0D2QB74	0.0	A0A0D2QB74_GOSRA; Uncharacterized protein
STRING	Gorai.009G075300.1	1e-172	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.3	9e-36	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Gorai.009G075300.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]