PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G079400.1

Common Name

B456_009G079400, LOC105769461

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 264aa MW: 29148.4 Da PI: 8.6525

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G079400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.3	2.3e-40	35	96	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Gorai.009G079400.1 35 HEQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 96 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	23	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-34	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDPSTRQHQE MANPSMENMS VNSKGQQARK PRPQHEQALK CPRCDSINTK FCYYNNYSLS 60 QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NKRSSSSSSS SSSSKRSQDQ PLLTSTTNPL 120 IAGHLPPLNY DTNDLSLAFA RLQKQSGFPL GFDDFGNPSL NGCTSSTSPP NPAIVDALRS 180 SFLGNQNSLQ NFYYGFGNEN MGEVEDMGFN GELMVPYHNE EMSNASTVTT MKKELSIADF 240 DSGRGTWNGF NSSWHGLLNS PLM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF351547	0.0	AF351547.1 Gossypium hirsutum clone JESPR310 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445564.1	0.0	PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBL	A0A0D2TFV4	0.0	A0A0D2TFV4_GOSRA; Uncharacterized protein
STRING	Gorai.009G079400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	1e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G079400.1
Entrez Gene	105769461

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]