PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G082700.1

Common Name

B456_009G082700, LOC105770290

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 722aa MW: 78623.9 Da PI: 7.1789

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G082700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.8e-09	427	464	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Gorai.009G082700.1 427 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 464 554458******************************88 PP
2	BELL	119.6	1.4e-38	290	360	1	71
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 +rqelq+kkakL+++l+eV++rY+qy++q+qtv++sFe++aglg+ak+Yt+lAl++iS++FrcLkdai+ q Gorai.009G082700.1 290 QRQELQMKKAKLVNMLDEVEQRYRQYHHQMQTVVASFEQAAGLGAAKSYTALALQTISKQFRCLKDAISCQ 360 69******************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.3E-65	216	359	IPR006563	POX domain
Pfam	PF07526	4.5E-50	221	358	IPR006563	POX domain
PROSITE profile	PS50071	11.774	405	468	IPR001356	Homeobox domain
SMART	SM00389	6.1E-9	408	472	IPR001356	Homeobox domain
CDD	cd00086	2.20E-12	408	469	No hit	No description
SuperFamily	SSF46689	6.42E-17	409	475	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-28	411	475	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	425	464	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MATYIHGSSE FQAAPAASDG MQTLYLMNPN YVPYSDTHQP ATATNMFFLN PAGNSLNPIS 60 LPHAPPSNYN HFLGLPLPSP TPTIGPSNSD EPNRPPPLVS GVQHNLWGSS IDKQNSSPGS 120 SSHPQLVSAV ATAGNSGGPL DVISQLGLRR SGVSPRQGLS LSLSSQQVPY RSSNVETVIQ 180 GQPEVPVPPT TSLAADDMRI SGSSPSTVSV VSNGISGVQS VVLGSKYLRA VQELLDEVVN 240 VGKGIKTDPS GGTKEKTKAA KKEPVAAVNG DGSSAGENGV EPGPELTTAQ RQELQMKKAK 300 LVNMLDEVEQ RYRQYHHQMQ TVVASFEQAA GLGAAKSYTA LALQTISKQF RCLKDAISCQ 360 TKATNKSLGE EDCLGVKMEG SRLRYVDNQI RQQRALQQLG MIQHHNAWRP QRGLPERAVC 420 VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYMEEIKE 480 QERNTNGSEE INANKNEQQM ETGSSSGGQT MDQVKAQSKP RAISQNNNNS ITSHADQFSN 540 STISTSPMGG SLVQQTSFNL IGSSDLDRGP KKPRNELQNS AFGILPMEME MKQGETREIN 600 MRFGDERLFK DHSYSYLSGT VYSSMREVGR FNHGQQLPPG FHGNSGVSLT LGLPDCENLS 660 LSGNHQNFVP NQTINDVEGA TQSDFCAINT QPQPSHSTTY DTMEMQSRKR FAAPLLPDFV 720 A*

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MATYIHGSSE FQAAPAASDG MQTLYLMNPN YVPYSDTHQP ATATNMFFLN PAGNSLNPIS  60
LPHAPPSNYN HFLGLPLPSP TPTIGPSNSD EPNRPPPLVS GVQHNLWGSS IDKQNSSPGS  120
SSHPQLVSAV ATAGNSGGPL DVISQLGLRR SGVSPRQGLS LSLSSQQVPY RSSNVETVIQ  180
GQPEVPVPPT TSLAADDMRI SGSSPSTVSV VSNGISGVQS VVLGSKYLRA VQELLDEVVN  240
VGKGIKTDPS GGTKEKTKAA KKEPVAAVNG DGSSAGENGV EPGPELTTAQ RQELQMKKAK  300
LVNMLDEVEQ RYRQYHHQMQ TVVASFEQAA GLGAAKSYTA LALQTISKQF RCLKDAISCQ  360
TKATNKSLGE EDCLGVKMEG SRLRYVDNQI RQQRALQQLG MIQHHNAWRP QRGLPERAVC  420
VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYMEEIKE  480
QERNTNGSEE INANKNEQQM ETGSSSGGQT MDQVKAQSKP RAISQNNNNS ITSHADQFSN  540
STISTSPMGG SLVQQTSFNL IGSSDLDRGP KKPRNELQNS AFGILPMEME MKQGETREIN  600
MRFGDERLFK DHSYSYLSGT VYSSMREVGR FNHGQQLPPG FHGNSGVSLT LGLPDCENLS  660
LSGNHQNFVP NQTINDVEGA TQSDFCAINT QPQPSHSTTY DTMEMQSRKR FAAPLLPDFV  720
A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	414	472	5	63	Homeobox protein Meis2
3k2a_B	5e-16	414	472	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526689	5e-65	HQ526689.1 Gossypium herbaceum clone NBRI_B_1357 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446876.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_012446877.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_012446878.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
TrEMBL	A0A0D2UIF1	0.0	A0A0D2UIF1_GOSRA; Uncharacterized protein
STRING	Gorai.009G082700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16274	5	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-116	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Gorai.009G082700.1
Entrez Gene	105770290

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]