PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G085200.1

Common Name

B456_009G085200, LOC105770909

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 168aa MW: 19207.3 Da PI: 5.0057

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G085200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	47.3	4.9e-15	8	103	5	95
NF-YB 5 drflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 ++lP a v r++k+ l + + + kda e + fi ++++ a+d c++ kr+t+n++d++ al ++ f ++v+pl++ l+++ Gorai.009G085200.1 8 AEELPKAIVRRVVKEKLSEcspdyDFNVHKDAHLAFTESARIFIHYLSATANDICKESKRQTMNAEDVFKALEEIEFSEFVKPLRASLAEF 98 5689********9997622222458************************************************************** PP NF-YB 91 releg 95 r+ ++ Gorai.009G085200.1 99 RKKNA 103 *8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.7E-31	5	162	IPR009072	Histone-fold
Pfam	PF00808	6.9E-10	10	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.52E-22	11	109	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MEKVVSEAEE LPKAIVRRVV KEKLSECSPD YDFNVHKDAH LAFTESARIF IHYLSATAND 60 ICKESKRQTM NAEDVFKALE EIEFSEFVKP LRASLAEFRK KNAGKKGGAA KENEVKKKRK 120 IEYSSAKNGT KTKQKKEDNH KEEEQVEGEQ EQDEEEDNEE EENHGSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	119	RKKNAGKKGGAAKENEVKKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447729.1	1e-116	PREDICTED: DNA polymerase epsilon subunit 3
TrEMBL	A0A0D2TG48	1e-115	A0A0D2TG48_GOSRA; Uncharacterized protein
STRING	Gorai.009G085200.1	1e-116	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-47	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Gorai.009G085200.1
Entrez Gene	105770909

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]