PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G085200.2

Common Name

B456_009G085200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 119aa MW: 13683.8 Da PI: 10.0765

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G085200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	45.1	2.4e-14	8	100	5	92
NF-YB 5 drflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 ++lP a v r++k+ l + + + kda e + fi ++++ a+d c++ kr+t+n++d++ al ++ f ++v+pl++ l+ Gorai.009G085200.2 8 AEELPKAIVRRVVKEKLSEcspdyDFNVHKDAHLAFTESARIFIHYLSATANDICKESKRQTMNAEDVFKALEEIEFSEFVKPLRASLAGR 98 5689********9997622222458********************************************************999877 PP NF-YB 91 re 92 r Gorai.009G085200.2 99 RM 100 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-28	5	106	IPR009072	Histone-fold
Pfam	PF00808	2.9E-10	10	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	7.62E-23	11	103	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MEKVVSEAEE LPKAIVRRVV KEKLSECSPD YDFNVHKDAH LAFTESARIF IHYLSATAND 60 ICKESKRQTM NAEDVFKALE EIEFSEFVKP LRASLAGRRM LGKRVEQPRK MRSKRRGK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447729.1	2e-64	PREDICTED: DNA polymerase epsilon subunit 3
TrEMBL	A0A0D2RWN4	1e-80	A0A0D2RWN4_GOSRA; Uncharacterized protein
STRING	Gorai.009G085200.1	8e-64	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	9e-47	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Gorai.009G085200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]