PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G090200.1
Common NameB456_009G090200, LOC105770965
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 293aa    MW: 31404.8 Da    PI: 6.5961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G090200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047114136123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C++sF++   L  H  +H
  Gorai.009G090200.1 114 YECKTCNRSFPSFQALGGHRASH 136
                         99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-13113138IPR007087Zinc finger, C2H2
SMARTSM003550.06114136IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.28E-9114136No hitNo description
PROSITE profilePS5015710.512114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576676.28E-9193220No hitNo description
SMARTSM003550.11198220IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-10198222IPR007087Zinc finger, C2H2
PROSITE profilePS501579.536198225IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQAQPDFEVS NIDHQALIMK GKRTKRQRSS SPFGVTVTSS SSSACGGGGG VAEEYNSISS  60
PVTSGEIYES TEEEEDMANC LIMLAQSDGP KRRSNIEEKQ EMVTATNKAG VYAYECKTCN  120
RSFPSFQALG GHRASHKKPK GATADEKKPL FLAFKDHGVE DADQFNRESP AVLALQVGNN  180
NNNNNKTNSH GNKGNKIHEC SICGSEFLSG QALGGHMRRH RAAASNQAAV SVDTTSIPIE  240
SGNGDGTKPR NILALDLNLP APEDDLRDAK FQFGAPQQAI VFTTPALIDC HY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447801.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X43e-69ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0D2UIN90.0A0A0D2UIN9_GOSRA; Uncharacterized protein
STRINGGorai.009G090200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-59C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]