PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G091200.2
Common NameB456_009G091200, LOC105768877
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 689aa    MW: 74553.5 Da    PI: 5.5779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G091200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06264284526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd+C +aHg
  Gorai.009G091200.2 264 PCPEFRK-GSCRQGDNCEYAHG 284
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.49E-1457135IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.93760135IPR020683Ankyrin repeat-containing domain
PfamPF127968.6E-860127IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0976090IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.9E-1561135IPR020683Ankyrin repeat-containing domain
CDDcd002046.21E-1362135No hitNo description
PROSITE profilePS5008812.23595130IPR002110Ankyrin repeat
SMARTSM002480.001295127IPR002110Ankyrin repeat
SMARTSM003565.0E-5259285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4263286IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4264284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094264286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4292322IPR000571Zinc finger, CCCH-type
SMARTSM0035625294317IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.174294318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MEGESRKEDE VPQKFSVLLE LSASNDLIGF KISVEEGGHD MDEAGLWYGR RLGSKKMGFE  60
ERTPLLIASL FGSQDVVNYI VERGRVDVNR ACGSDGATAL HCAAAGGSFY SPEIVKILLD  120
ASADIDSLDA NGNRPGDLIA PACNSAFGLR KKRLESLLKG SDCVGEIEGL PAQLGNEMGG  180
LEEQEGSMPR VSKDGTEKKE YPVDLTLPDI KNGIYGTDEF RMYTFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GSCRQGDNCE YAHGIFECWL HPAQYRTRLC  300
KDETNCTRRV CFFAHKPEEL RPLYASTGSA VPSPRSYSAA GSSLDMGSMS PLALGSPSVM  360
IPPTSTPPLT PTGASSPMGG SMWPSQSNII PPTLQLPGSR LKTTLSARDM DLDMELLGLE  420
CRRRRQQQQQ LIDEISGLSS PTSWNNSTAF SAAGDRTGEL NRFGGVKPTN LDDIFGSLDP  480
SIMPQIQGLS LDAAASQLQS PTGVHTRQNI NQQLRASYPT NLPSSPVRAS SSFGIDPSGP  540
SAAAVLSSRS SAFAKRSQSF IERTAVNRHS GLSSPASSAS AMPSNLSDWG SPDGKLDWGI  600
QGEELNKLRK SASFGFRSSG SNLGNAPRSI SSTTDEPDVS WVQSLVVDPP PAGQLSFEEE  660
QCHRNPGGAE MLPAWVEQLY MDQKQMVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.10030.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487520450.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775781e-138JX577578.1 Gossypium hirsutum clone NBRI_GE9431 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444569.10.0PREDICTED: zinc finger CCCH domain-containing protein 66 isoform X1
RefseqXP_012444570.10.0PREDICTED: zinc finger CCCH domain-containing protein 66 isoform X2
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0D2TM430.0A0A0D2TM43_GOSRA; Uncharacterized protein
TrEMBLA0A0D2UIP40.0A0A0D2UIP4_GOSRA; Uncharacterized protein
STRINGGorai.009G091200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]