PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G098200.1

Common Name

B456_009G098200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 428aa MW: 49090 Da PI: 9.4691

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G098200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	60.1	4.7e-19	82	189	3	113
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL++c++av+ d++ a++lL ++ +sp+gd ++Rla+yf+++L+ rl+++ l+ ++p+++t +++l+++ l + v+P+ ++ Gorai.009G098200.1 82 SLLTQCVQAVAVYDQRIATELLGKIGYYSSPYGDGTERLAHYFAKGLEIRLNGTRAPLFTQIPSNTTL---ATDVLKSHILHVSVFPFGRI 169 79*************************************************888888888777776...8999999999****** PP GRAS 94 shltaNqaIleavegeervH 113 s+l N+ I + +e++++vH Gorai.009G098200.1 170 SNLFSNRNIAKLAEKATTVH 189 ****************** PP
2	GRAS	213.5	1.1e-65	185	423	137	374
GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225 + + +lRiTg++ p++g +e++e+tg+rL++++e+++vpfefn+ +akr+e+++ eeL+++++E l+Vn++++l +l+d+sv+l+s+r+ Gorai.009G098200.1 185 ATTVHLRITGIDFPQPGfrPAERIEATGRRLRRYCENVNVPFEFNA-IAKRWETIRAEELNIEKDELLVVNCMYRLRNLPDDSVTLNSPRN 274 44579*********9*************************.7*************************************** PP GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 vLkl+k+l+P++++ + ++n + F +rf ea+ ++sa+fd lea+++ e+ +r +Ere +gr++ nv+a eg er r et+++W+ Gorai.009G098200.1 275 MVLKLIKRLNPDLFIQGVVNGNYNFPFFINRFREAFFHFSAMFDVLEANVGGEDPDRLLLERETFGRDAINVIAYEGMERSDRSETYKQWQ 365 *************************************************************************************** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r ++aGF++++l++++ + a+++l+ + + + +e + +++++gWk+r + ++S+W+ Gorai.009G098200.1 366 LRNQKAGFRQLSLEQNMLNRARTVLKSDYHKDFDIEVDGKWMLQGWKGRVIHALSCWK 423 ***********************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.206	54	403	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-63	185	423	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
RRKNKHLAMA VEGSSEEHMF DEVFLVKTGN GVSMSCPLYE GYQNREANSK LEDNGEVKRN 60 NRKRIPAKKQ AGNGKEMVDL GSLLTQCVQA VAVYDQRIAT ELLGKIGYYS SPYGDGTERL 120 AHYFAKGLEI RLNGTRAPLF TQIPSNTTLA TDVLKSHILH VSVFPFGRIS NLFSNRNIAK 180 LAEKATTVHL RITGIDFPQP GFRPAERIEA TGRRLRRYCE NVNVPFEFNA IAKRWETIRA 240 EELNIEKDEL LVVNCMYRLR NLPDDSVTLN SPRNMVLKLI KRLNPDLFIQ GVVNGNYNFP 300 FFINRFREAF FHFSAMFDVL EANVGGEDPD RLLLERETFG RDAINVIAYE GMERSDRSET 360 YKQWQLRNQK AGFRQLSLEQ NMLNRARTVL KSDYHKDFDI EVDGKWMLQG WKGRVIHALS 420 CWKPVQD*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

RRKNKHLAMA VEGSSEEHMF DEVFLVKTGN GVSMSCPLYE GYQNREANSK LEDNGEVKRN  60
NRKRIPAKKQ AGNGKEMVDL GSLLTQCVQA VAVYDQRIAT ELLGKIGYYS SPYGDGTERL  120
AHYFAKGLEI RLNGTRAPLF TQIPSNTTLA TDVLKSHILH VSVFPFGRIS NLFSNRNIAK  180
LAEKATTVHL RITGIDFPQP GFRPAERIEA TGRRLRRYCE NVNVPFEFNA IAKRWETIRA  240
EELNIEKDEL LVVNCMYRLR NLPDDSVTLN SPRNMVLKLI KRLNPDLFIQ GVVNGNYNFP  300
FFINRFREAF FHFSAMFDVL EANVGGEDPD RLLLERETFG RDAINVIAYE GMERSDRSET  360
YKQWQLRNQK AGFRQLSLEQ NMLNRARTVL KSDYHKDFDI EVDGKWMLQG WKGRVIHALS  420
CWKPVQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-34	86	424	24	379	Protein SCARECROW
5b3h_D	2e-34	86	424	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982223.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A0D2RXA9	0.0	A0A0D2RXA9_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.009G098200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28591	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-133	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Gorai.009G098200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]