PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G098300.2
Common NameB456_009G098300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 700aa    MW: 77381.1 Da    PI: 8.6975
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G098300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07581631148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++l
  Gorai.009G098300.2 581 RRPFSISEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTLL 631
                         56788899******************9988889**************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.36E-6385475IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.642576635IPR017930Myb domain
SMARTSM007172.6E-6580633IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-10581632IPR009057Homeodomain-like
CDDcd116605.40E-17582632No hitNo description
SuperFamilySSF466894.95E-16582663IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MEKRLDYGFN GYQVPTIPRA TRSARKRVPF RKRVEGNRIS AFDLLATVAG TLLLDKESSP  60
ASNKAWNAED QSAVEKNNVK EERQDGDQSL KLETCNVSEL VPQTNDPNYS SRESPSLQNG  120
TQFGVTSAIT TSERLDSQKL INGKIKNEMG GLACKVETGP FVSRTPGDCV EPVSENKVLT  180
DEELDRTNKA SSGEVADKCP LEDPLVLDGK PPAVVSSDSS IKAPSFGEHD PFISFPIQQY  240
DVNVVSRDDD EKSSGCTHPS PIREPFRSTP RIGDRRIRKI LASRYWKVAL RSKNATYSNY  300
DENLKSGYCN RSTYKRLRSG RNFPFKKRKF LHYTSESNSD GGTIGEGISD LPEKNINGKA  360
SILYSKMHGV TGESSSLADQ RKSFNSRDPH VKLRIKSFRV PELFIEIPES ATVGSLKRTV  420
KEAVTAILGG GLCVGVLLQG KKVRDDNKTL LQTGISRDNQ MDSLGFSLEP NPSHTSPSLC  480
PGGSPLTLPH DIPLPLARYP ANPGLVNQVT CHPSTEPCIP NACDFIESNN DCTASPTDMF  540
DKSTTESKAL VAVPAMSVET LAAVPVHKKS KQSEVAQRRI RRPFSISEVE ALVQAVEKLG  600
TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL LHTARISPQQ RRGEPVPQEL LDRVLNAHTY  660
WSQQQAKQQQ QQLPESCLPH YNSTMIGSGR CDDDENILG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-565656691105Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.16610.0flower| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9643741e-65JX964374.1 Gossypium hirsutum clone NBRI_TRANS-643 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444989.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444990.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444991.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444992.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444993.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_012444994.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A0D2UJ300.0A0A0D2UJ30_GOSRA; Uncharacterized protein
STRINGGorai.009G098300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-139TRF-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]