PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G100100.1

Common Name

B456_009G100100, LOC105770986

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 312aa MW: 33826.8 Da PI: 9.6141

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G100100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	64	124	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Gorai.009G100100.1 64 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKKK 124 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-35	48	120	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	67	122	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MVFPSVPVYL DPPNWQQQLN HQQGACSENP QLPPLPTDHH VGASGSIRAG SMADRARLAK 60 VPQPEAALKC PRCESTNTKF CYFNNYSLTQ PRHFCKTCRR YWTRGGALRN VPVGGGCRRN 120 KKKKSSSSSK PSASAERQSG SNSINTVIPS EITAHLPHQT SHLPFMASLQ NFSQYGIGNI 180 GLNFGGIHGQ IGATSGGSER SDMGFQIGTN SDMSNAILSV RSGTHQQFPF IEPTNGLYPL 240 QSEYIGASPS MVEESQLLRC TSSSSRVSQR GPVKMENNNQ GLNLSRPLLG VSDQNNQYWG 300 GNSWTDLSGL K*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447825.1	0.0	PREDICTED: dof zinc finger protein DOF2.2-like isoform X1
TrEMBL	A0A0D2QCQ8	0.0	A0A0D2QCQ8_GOSRA; Uncharacterized protein
STRING	Gorai.009G100100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	2e-58	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Gorai.009G100100.1
Entrez Gene	105770986

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]