PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G103500.1
Common NameB456_009G103500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 231aa    MW: 26169.9 Da    PI: 9.1446
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G103500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-20765356
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                        +R+++t++ql  Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a+e+
  Gorai.009G103500.1  7 SRWCPTTQQLMMLEEMYRSgIRTPNANQIQQITSQLslygKIEGKNVFYWFQNHKARER 65
                        7*****************99*************************************98 PP
2Wus_type_Homeobox113.88.5e-37667364
   Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                        ++RW+Pt++Q+++Lee+y+sG+rtPn+++iq+it++L+ yGkie+kNVfyWFQN+kaRer +
  Gorai.009G103500.1  6 SSRWCPTTQQLMMLEEMYRSGIRTPNANQIQQITSQLSLYGKIEGKNVFYWFQNHKARERLR 67
                        79*********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.009267IPR001356Homeobox domain
SMARTSM003897.9E-5471IPR001356Homeobox domain
SuperFamilySSF466891.63E-10765IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-7765IPR009057Homeodomain-like
PfamPF000461.4E-17765IPR001356Homeobox domain
CDDcd000862.48E-4865No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAPAGSSRWC PTTQQLMMLE EMYRSGIRTP NANQIQQITS QLSLYGKIEG KNVFYWFQNH  60
KARERLRLRK KLTKQLQQQQ QLYHQLQHNP HFLHYLDSPA SPAFQHLSCY NPASANLFLQ  120
AGIHDEGGKQ VTNYTWNIDI PENVDKNKAI MRMYGSDWLM MVDVGLPLSS LPCYSMISRP  180
PLKTLELFPV TASNLKEECN NINNNNSNSS NSLSSVSCNI TPAKVPVSLP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442601.11e-171PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A0D2TMW61e-171A0A0D2TMW6_GOSRA; Uncharacterized protein
STRINGGorai.009G103500.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74802642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.16e-35WOX family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]