PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G109300.3
Common NameB456_009G109300, LOC105771163
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 323aa    MW: 36168 Da    PI: 8.5005
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G109300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37.1e-101261631954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Gorai.009G109300.3 126 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 163
                         664459******************************88 PP
2BELL82.17.3e-271551872
                BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                        +V++rYk y++q+q+v+ssFe vaglg+a+pY+ lAlk+++r FrcL+ ai +qi
  Gorai.009G109300.3  1 MVCRRYKLYHQQMQMVVSSFESVAGLGAATPYVPLALKTVARDFRCLRIAILDQI 55
                        79***************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0051153IPR006563POX domain
PfamPF075262.2E-21251IPR006563POX domain
PROSITE profilePS5007112.212104167IPR001356Homeobox domain
CDDcd000863.03E-12107168No hitNo description
SMARTSM003894.1E-8107171IPR001356Homeobox domain
SuperFamilySSF466891.84E-17108174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-28110171IPR009057Homeodomain-like
PfamPF059201.2E-18124163IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVCRRYKLYH QQMQMVVSSF ESVAGLGAAT PYVPLALKTV ARDFRCLRIA ILDQIKHVSR  60
ALGEDLLSPT TGTSGSKGDI NMSRLKCFGQ KSGGVNMGFL EPQQHSWRPQ RGLPERSVAI  120
LRAWLFEHFL HPYPTDTDKH MLATQTGLSR NQVSNWFINA RVRVWKPMVE EIHMLESKCL  180
AEGNQNLSKS EGKSTSEGRI SCPNDGQSIN RSCVNALSDK QLACADMLVA DAHDLEHWNH  240
EKRSSMDFHI PTSMEGSLMG FAPYQQSRLE NGGLGAVSLT LGLMHGVESA QQQQRQQQQQ  300
YQQQEHHSRR QFGGHLIHDF AG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16113171563Homeobox protein Meis2
3k2a_B8e-16113171563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9645391e-117JX964539.1 Gossypium hirsutum clone NBRI_TRANS-808 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448028.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_012448029.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_012448030.10.0PREDICTED: BEL1-like homeodomain protein 4
TrEMBLA0A0D2RYE10.0A0A0D2RYE1_GOSRA; Uncharacterized protein
TrEMBLA0A0D2TN700.0A0A0D2TN70_GOSRA; Uncharacterized protein
STRINGGorai.009G109300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-68BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]