PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G112900.1
Common NameB456_009G112900, LOC105768609
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 159aa    MW: 17655.2 Da    PI: 7.7722
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G112900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.13.2e-4361051100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca+dC++apyfp+++p++fa+vhk+FGasn++k l++lp ++r da+ss+v+eA+ar+rdPvyG+vg i+ lq+q++ql+
  Gorai.009G112900.1   6 PCAACKFLRRRCAEDCIFAPYFPSQDPHRFAIVHKVFGASNISKALQELPVDQRGDAASSMVFEANARVRDPVYGCVGAISYLQNQVSQLQ 96 
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          +l ++++e
  Gorai.009G112900.1  97 MQLTVAQTE 105
                         ***999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.375106IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-436103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MRSCSPCAAC KFLRRRCAED CIFAPYFPSQ DPHRFAIVHK VFGASNISKA LQELPVDQRG  60
DAASSMVFEA NARVRDPVYG CVGAISYLQN QVSQLQMQLT VAQTELLRIK MQQDLPSPPY  120
LAPTNNFNNI DSQPAYLNFP PSTNVIQDPS LKTESIWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-47510810113LOB family transfactor Ramosa2.1
5ly0_B2e-47510810113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444081.11e-115PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW32e-62LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0D2THU51e-114A0A0D2THU5_GOSRA; Uncharacterized protein
STRINGGorai.009G112900.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.17e-65LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]