PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G116800.1
Common NameB456_009G116800, LOC105769690
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 462aa    MW: 49490.8 Da    PI: 4.7159
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G116800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31241299259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Gorai.009G116800.1 241 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 299
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-31234301IPR003657WRKY domain
PROSITE profilePS5081133.109235301IPR003657WRKY domain
SuperFamilySSF1182903.01E-26238301IPR003657WRKY domain
SMARTSM007741.4E-37240300IPR003657WRKY domain
PfamPF031069.9E-26242299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MFVSLHMDNY QGEGDLNDIV RASGGGPLSC ATGHGSNTVP ASSWQQFPSD PLNFPSSAME  60
DHGLNAFGDP FSAMRDPLLH ELDVAAGCSA YFSSPNSTDH IINTTSSATV EADTCNFSGS  120
STMVGQGKLF EEDMPSPCNI FSRIQISASS SKLPVSPCDS PMMAACVSPR GIKAPAVLPS  180
DMINANTSKS CLIDSTGPLQ ISSPRNLGIK RRLGKSQVKK VVCIPAPAAA NSRSSGEVVP  240
SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW  300
PTQRNALAGS TRSQPSKNNN NNAAASKITS PRSQTQNAVT PKEEDLKESS NDALSPTVAA  360
VNSTASASAK EESEDMEKQL EIDDAEFGEG IPETYRPALM AGDSQQPEDF FAELDEIETD  420
PLNLLFPQGF GGGDQDEQKE KKIMDPFGLF DWPPGNNDAS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-26215302280Disease resistance protein RRS1
5w3x_D2e-26215302280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384580.0KM438458.1 Gossypium aridum WRKY27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445939.10.0PREDICTED: probable WRKY transcription factor 14 isoform X1
TrEMBLA0A0D2QE110.0A0A0D2QE11_GOSRA; Uncharacterized protein
STRINGGorai.009G116800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-101WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]