PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G116800.4

Common Name

B456_009G116800, LOC105769690

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 460aa MW: 49320.6 Da PI: 4.7159

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G116800.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.5e-31	239	297	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Gorai.009G116800.4 239 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 297 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-31	232	299	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	233	299	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-26	236	299	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	238	298	IPR003657	WRKY domain
Pfam	PF03106	9.8E-26	240	297	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MFVSLHMDNY QGEGDLNDIV RASGGGPLSC ATGHGSNTVP ASSWQQFPSD PLNFPSSAME 60 DHGLNAFGDP FSAMRDPLLH ELDVAAGCSA YFSSPNSTDH IINTTSSATV EADTCNFSGS 120 STMVGQGKLF EEDMPSPCNI FSRIQISASS SKLPVSPCDS PMMAACVSPR GIKAPAVLPS 180 DMINANTSKS CLIDSTGPLQ ISSPRNLGIK RRKSQVKKVV CIPAPAAANS RSSGEVVPSD 240 LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY TSEHNHPWPT 300 QRNALAGSTR SQPSKNNNNN AAASKITSPR SQTQNAVTPK EEDLKESSND ALSPTVAAVN 360 STASASAKEE SEDMEKQLEI DDAEFGEGIP ETYRPALMAG DSQQPEDFFA ELDEIETDPL 420 NLLFPQGFGG GDQDEQKEKK IMDPFGLFDW PPGNNDASF*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MFVSLHMDNY QGEGDLNDIV RASGGGPLSC ATGHGSNTVP ASSWQQFPSD PLNFPSSAME  60
DHGLNAFGDP FSAMRDPLLH ELDVAAGCSA YFSSPNSTDH IINTTSSATV EADTCNFSGS  120
STMVGQGKLF EEDMPSPCNI FSRIQISASS SKLPVSPCDS PMMAACVSPR GIKAPAVLPS  180
DMINANTSKS CLIDSTGPLQ ISSPRNLGIK RRKSQVKKVV CIPAPAAANS RSSGEVVPSD  240
LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY TSEHNHPWPT  300
QRNALAGSTR SQPSKNNNNN AAASKITSPR SQTQNAVTPK EEDLKESSND ALSPTVAAVN  360
STASASAKEE SEDMEKQLEI DDAEFGEGIP ETYRPALMAG DSQQPEDFFA ELDEIETDPL  420
NLLFPQGFGG GDQDEQKEKK IMDPFGLFDW PPGNNDASF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-26	213	300	2	80	Disease resistance protein RRS1
5w3x_D	3e-26	213	300	2	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669791	0.0	KF669791.1 Gossypium hirsutum WRKY transcription factor 72 (WRKY72) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313902.1	0.0	probable WRKY transcription factor 14
Refseq	XP_012445940.1	0.0	PREDICTED: probable WRKY transcription factor 14 isoform X2
TrEMBL	A0A068LEN3	0.0	A0A068LEN3_GOSHI; WRKY transcription factor 72
TrEMBL	A0A0D2TNP4	0.0	A0A0D2TNP4_GOSRA; Uncharacterized protein
STRING	Gorai.009G116800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-103	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Gorai.009G116800.4
Entrez Gene	105769690

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]