PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G141200.2
Common NameB456_009G141200, LOC105767723
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 592aa    MW: 64129.4 Da    PI: 8.9057
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G141200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-0597119123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.009G141200.2  97 FVCEICNKGFQRDQNLQLHRRGH 119
                         89*******************88 PP
2zf-C2H212.50.00045173195123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Gorai.009G141200.2 173 WKCEKCSKKYAVQSDWKAHSKTC 195
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.93E-796119No hitNo description
Gene3DG3DSA:3.30.160.602.0E-596119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94997119IPR007087Zinc finger, C2H2
SMARTSM003550.01797119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM0035567138168IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4161194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.93E-7168193No hitNo description
SMARTSM00355140173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MMKSFMFHQQ QQQQQQQQQV LEENMSNLTS ASASGEASIS SGNRTEAGSN YPQQYFTTSQ  60
QPQTQPVKRK RNLPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN  120
LPWKLKQRTN KEVRKKVYVC PETNCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCEKCSK  180
KYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAVESAR AINPLLSPHQ  240
PGTAAASHMN LQVPQFNPHD IKLQAFSLKK EQQSFTPLRP EIPPWLASQP MLGAGPGPPH  300
PIDLSSPSSS IFSPRLDHQD LTLHGTPSAN PSLVPTLPPY HHTALPSPHM SATALLQKAA  360
HMGATMSRKS GSSSVPSTVA AAASASLMRP HQQTHVSPDS AGTNNNTTTA GFGLDLPSRE  420
ELDVGSSSGI IHGLAPFGNR KPAANAGDDD DDNNNIAGSG ATPSLLQDMI NSLSSATGFD  480
ATNSFDDIAF GGIFNATKKL CGSSINESFS KTTTPTVPTT TNGTRNDHHG STAGSTTTTT  540
TQGGDQGLTR DFLGLRAFSH TDILNIAGPG RNYCIDTSQE QHNQSQKPWQ G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34169230364Zinc finger protein JACKDAW
5b3h_F2e-34169230364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123135KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271320.0HQ527132.1 Gossypium herbaceum clone NBRI_D2_310 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442745.10.0PREDICTED: protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-123IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D2TPW90.0A0A0D2TPW9_GOSRA; Uncharacterized protein
STRINGGorai.009G141200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-102indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]