PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G143800.5

Common Name

B456_009G143800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 211aa MW: 23412.6 Da PI: 10.157

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G143800.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101	1.2e-31	56	111	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ep+YVNaKQy++Il+RRq Rakle+++kl +k rkpy+heSRh hA++R+RgsgG+F Gorai.009G143800.5 56 EPIYVNAKQYHAILRRRQYRAKLEAQNKL-IKVRKPYMHESRHLHAIKRARGSGGQF 111 8**************************.***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.2E-35	53	114	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.263	54	114	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.2E-26	56	111	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-23	57	79	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	59	79	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.0E-23	88	111	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSFLLHKVHI PHHYANPYLG SVAATAYGSQ AMIHHAHMMA MLPARVPLPL DLKEGEPIYV 60 NAKQYHAILR RRQYRAKLEA QNKLIKVRKP YMHESRHLHA IKRARGSGGQ FLNTKKLQSK 120 STPTSHGPDM SRSPQLHLSA NISVTDVHQP ENFKDSGSAN SCSDVTSASN SDEIFQQPDF 180 RFYGYPSCHT GEAMPGHAGH ILLSSNSRAN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	56	119	3	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445239.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
Swissprot	Q93ZH2	9e-56	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A0D2ULV8	1e-155	A0A0D2ULV8_GOSRA; Uncharacterized protein
STRING	Gorai.009G143800.1	1e-147	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-54	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Gorai.009G143800.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]