PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G143800.6

Common Name

B456_009G143800, LOC105769266

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 181aa MW: 20176.8 Da PI: 10.2575

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G143800.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.4	8.9e-32	26	81	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ep+YVNaKQy++Il+RRq Rakle+++kl +k rkpy+heSRh hA++R+RgsgG+F Gorai.009G143800.6 26 EPIYVNAKQYHAILRRRQYRAKLEAQNKL-IKVRKPYMHESRHLHAIKRARGSGGQF 81 8**************************.***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.2E-35	23	84	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.263	24	84	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.4E-26	26	81	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.4E-23	27	49	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	29	49	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.4E-23	58	81	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MQIHHAHMMA MLPARVPLPL DLKEGEPIYV NAKQYHAILR RRQYRAKLEA QNKLIKVRKP 60 YMHESRHLHA IKRARGSGGQ FLNTKKLQSK STPTSHGPDM SRSPQLHLSA NISVTDVHQP 120 ENFKDSGSAN SCSDVTSASN SDEIFQQPDF RFYGYPSCHT GEAMPGHAGH ILLSSNSRAN 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-21	26	89	3	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445237.1	1e-132	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
Refseq	XP_012445238.1	1e-132	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
Swissprot	Q93ZH2	3e-50	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A0D2QFW9	1e-131	A0A0D2QFW9_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2TJT1	1e-132	A0A0D2TJT1_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2TPZ8	1e-132	A0A0D2TPZ8_GOSRA; Uncharacterized protein
STRING	Gorai.009G143800.1	1e-132	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-52	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Gorai.009G143800.6
Entrez Gene	105769266

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]