PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G147300.3
Common NameB456_009G147300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 287aa    MW: 31855 Da    PI: 4.3818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G147300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.4e-0939662855
                 AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                        r r++lg+f taeeAa+a++  +++++g
  Gorai.009G147300.3 39 RVRVWLGTFNTAEEAARAYDSEARRIRG 66
                        479**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-93180IPR001471AP2/ERF domain
CDDcd000181.48E-163975No hitNo description
SuperFamilySSF541718.5E-113976IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-173975IPR001471AP2/ERF domain
PROSITE profilePS5103212.2994174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMSLLLKFLC FVAWWKFSYD LLFSSTITCI IRFMHVCIRV RVWLGTFNTA EEAARAYDSE  60
ARRIRGKKAK VNFPDEMPRT SPKRVIKTND EKPLPMSNLS PVEPNINQNF NCLNKPEQVF  120
YDTMGFVEEK APMDPFAYVD TVPAAVDVGL KPFGQSDNTP LYFSSDQGST SFDCSDFGWG  180
EHGAKTPEIS SALEATMEGD DFLVDANPKK KLKPSSENVM PIEDNSAESL SDELLALGDQ  240
MKYPFLEGNW DATLDALLNG DASQYGGALT DLWSFGDFPA VAGGHF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.27560.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487912520.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3725771e-138DQ372577.1 Gossypium hirsutum isolate vdrg18 disease resistance-related mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445269.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLA0A0D2TQA30.0A0A0D2TQA3_GOSRA; Uncharacterized protein
STRINGGorai.009G147300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-29related to AP2 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]