PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G152700.4
Common NameB456_009G152700, LOC105769253
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 821aa    MW: 90642.9 Da    PI: 6.5105
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G152700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.7e-2444145199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Gorai.009G152700.4  44 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 131
                         99*****************************8544444..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Gorai.009G152700.4 132 -WNEKNQLLLGIRRA 145
                         .8899999****997 PP
2Auxin_resp120.99.4e-40170253183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+++YnPras+seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Gorai.009G152700.4 170 AAHAASTNSRFTIFYNPRASPSEFVIPLTKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 253
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-4829173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-4236159IPR015300DNA-binding pseudobarrel domain
CDDcd100179.09E-2243144No hitNo description
PROSITE profilePS5086312.54844146IPR003340B3 DNA binding domain
PfamPF023623.1E-2244145IPR003340B3 DNA binding domain
SMARTSM010192.0E-2444146IPR003340B3 DNA binding domain
PfamPF065071.2E-34170253IPR010525Auxin response factor
PfamPF023097.5E-8679776IPR033389AUX/IAA domain
SuperFamilySSF542773.99E-7680762No hitNo description
PROSITE profilePS5174524.392687771IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MHADVETDEV YAQMTLQPLN PQEQKEAYLP AELGTSSRQP TNYFCKTLTA SDTSTHGGFS  60
VPRRAAEKVF PPLDFSQQPP AQELIARDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVLF IWNEKNQLLL GIRRANRPQT VMPSSVLSSD SMHLGLLAAA AHAASTNSRF  180
TIFYNPRASP SEFVIPLTKY IKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD  240
PVRWPNSHWR SVKVGWDEST AGDRQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPAGLPS  300
FHGIKDDGLG MNSPLMWLQG DAGRGMPSLN FPGIGVTPWM QPRLDAASML GLQTDIHQAM  360
AAAALQDMRA VDPSKSATTT LLQFQQPQNL SCRPAALMQS QMLQQSQPQA FLQGVEDNQH  420
QSQTQAQTQP PLVQQQLQQQ NSFNNHQHQQ QLQHPLSQQH QQLVDHQHIS TGVSAMSQYT  480
PASQSRSSPF QAIPSLCQQQ SFSDSNGHTM TSPIVSPLHG LLGSFPQDES SGLLNLPRSN  540
PVITSAAWPS KRAAVEVLSS GSPQCVLPQV EQLGPTQTNI SHNSISLPPF PGRECSIDQA  600
GGTDPQSHLL FGVNIEPSSL LLQNGMSSLR GVGSESDSTT IPFSSNYAST AGTDFSVNPA  660
MTPSSCIEEL GFLQSPENVG QENPQTRTFV KVYKSGSFGR SLDISKFSSY NELRSELARM  720
FGLEGQLEDP LRSGWQLVFV DRENDVLLLG DDPWPEFVNS VWCIKILSPQ EVQQMGKRGL  780
ELLNSVPVQR LLNGSCDDYA SQQDSRNLSS GIASVGSLDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1241274115388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445216.10.0PREDICTED: auxin response factor 6-like isoform X3
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0D2UMK30.0A0A0D2UMK3_GOSRA; Auxin response factor
TrEMBLA0A0D2UML00.0A0A0D2UML0_GOSRA; Auxin response factor
STRINGGorai.009G152700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]